6553 Commits
Author SHA1 Message Date
Edgar ArakelyanandClaude Opus 5.5 fc4c381dd7 feat(desktop): keep an agentenv computer up and drive it through REA's MCP tools (#9041)
* feat(desktop): keep an agentenv computer up and drive it through REA's MCP tools

- A Python helper keeps one agentenv computer up per build with
  run_bundle(keep=True) and reports its address, MCP URL, control token
  and sandbox id; it tears the computer down when stdin closes.
- AgentEnvComputer owns the helper, waits for readiness, holds one MCP
  session to the computer's computer_* tools, records through the
  computer-recording routes, and removes the sandbox's containers by
  label when agentenv cannot confirm teardown. The token never leaves it.
- start_build_computer starts a computer from a request (archive package,
  apt repository or .deb, opened on demand with REA in /opt/rea) or from
  a bundle folder; act_on_build_computer forwards screenshot, click,
  drag, scroll, type, key and wait and returns the driver's images
  unchanged; close_build_computer tears it down.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): remove a build computer's container by name when agentenv cannot confirm teardown

agentenv's local provider runs an ordinary computer as agent-<sandbox id>
without the agentenv.sandbox label, so the label-only fallback found
nothing and reported a running computer as removed. The fallback now
lists containers by exact name and by label. The real test holds its
recording open long enough for a first frame, checks the container by
name, and runs rea inside the computer; the guide and tool descriptions
say the app opens from the Applications menu and that a screenshot after
opening a menu should come from a wait.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): own failed build-computer starts, keep ids past oversized screenshots, bound recordings

- A start is owned from the helper's spawn. One that fails and whose
  teardown is unconfirmed stays held under a computer_id close can retry;
  closeAll refuses new starts, cancels and joins starts in progress, then
  closes every held computer.
- When the first screenshot is too large, the error carries REA's result
  with the computer_id, and start_build_computer takes screenshot region,
  format and quality.
- Recordings are refused before reading when the manifest's total exceeds
  the allowance, then fetched one segment at a time, each read bounded and
  checked against its size and sha256.
- The helper keeps the tail of its output (a new tail retention mode in
  ProviderProcessSupervisor), so a build's own error is not crowded out.
- A helper that reported no computer exits on its own before SIGTERM, so
  no phantom owner is kept.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): bound a build computer's action log

Every action kept its full arguments for the computer's whole life, so a long
session grew REA's memory without limit. The log now keeps the latest 256
actions within 256 KiB, cuts each string to 1 KiB and each list to 64 items
(naming what it cut), and keeps the total and the last applied index of each
kind of action, so rules over the whole session hold after entries drop.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-06 11:01:11 +08:00
RRFZ de8b2f3592 fix(pe): reject malformed and repeated certificate extensions (#8928)
RFC 5280 4.1 defines an Extension as extnID, an optional critical
BOOLEAN and an extnValue OCTET STRING. Section 4.2 says a certificate
MUST NOT include more than one instance of an extension.

The decoder only checked that extensions were a SEQUENCE. Any entry,
and any repeat, was accepted.
2026-11-06 10:15:05 +08:00
RRFZ b2672d8727 fix(pe): reject a SignerInfo version that does not match its sid (#8924) 2026-11-06 10:14:35 +08:00
RRFZ 4b9392e41c fix(pe): reject certificate versions and fields RFC 5280 does not allow (#8921) 2026-11-06 10:14:15 +08:00
RRFZ f1212b9e4e fix(cli): reject non-decimal native UI and command deadline options (#8920) 2026-11-06 10:13:45 +08:00
Afloat 3eff8065e7 fix(process): preserve UTF-8 at diagnostic truncation boundaries (#8907)
* fix(process): preserve UTF-8 at diagnostic truncation boundaries

* fix(process): preserve malformed UTF-8 excerpt evidence
2026-11-06 10:13:14 +08:00
Afloat a3621e5e1f fix(process): resume buffered NDJSON frames on partial chunks (#8909) 2026-11-06 10:12:43 +08:00
Afloat b153ba8ddd fix(process): honor cancellation at bounded file read completion (#8908) 2026-11-06 10:11:56 +08:00
Dragolone b28b1e0ae2 fix(adb): list devices adb reports with bare no-permissions text (#8905)
adb prints the no-permissions state as "no permissions[ (reason)]; see [URL]"
and omits the reason when it finds no udev problem to name, for example on a
Linux host without a plugdev group. The state matcher required whitespace after
"no permissions", so that line counted as unrecognized and list_adb_devices
refused the whole listing, hiding every other attached device.

Accept ";" after this one state. Other states still need a whitespace or
end-of-line boundary.
2026-11-06 10:11:24 +08:00
Edgar ArakelyanandClaude Opus 5.5 c363f3e27b feat(desktop): pick seed and end by checkpoint, and keep the capture host out of bundles (#9037)
* feat(desktop): capture a Linux desktop application in use

Add `capture-desktop-application`, a CLI-only, Linux and X11 capture that
launches an installed desktop application, watches it while it is used and
writes capture Evidence plus SHA-256 addressed content:

- inventory: desktop entry, launch command, executable, package and its
  apt sources (or snap, flatpak, AppImage), Electron markers and candidate
  state directories;
- session: the launched process tree, client windows from xprop with the
  first application window time and a window match, and files held open;
- state: a stat walk of the home directory before launch, at checkpoints
  read from stdin, at stop and after exit, with created, modified, deleted
  and retyped paths and the content of changed files and state directories.

It refuses non-Linux hosts, missing DISPLAY or xprop, a non-empty output
folder and an application whose window is already open, and signals only
processes it started.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): own launched processes, confirm walk coverage and keep cancelled captures

- Launch through the owned provider path with a run token; release with
  SIGTERM, then the token-verified group cleanup, after every session.
  Processes without the token are never signalled; each records whether it
  carries it, and the session records whether cleanup was verified.
- Report creations and deletions only where a walk listed the nearest
  existing directory; count the rest as unconfirmed.
- Retain a file only when it is still the walked version, through owned
  no-follow reads; charge the budget only for new content; create files
  exclusively in a private output folder owned by the caller.
- Walk content roots outside the home directory, compare paths in their
  physical spelling, and run executables from the caller's directory.
- Refuse when the window list cannot be read, re-evaluate window ownership
  each sample, handle one queued request per sample with a bounded stdin
  queue, and write the capture with end reason `cancelled` on interruption.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): keep owned cleanup failures and fresh digests

- Allow a capture cancelled before any requested checkpoint to hold only the
  baseline.
- Retry an incomplete stop once; if cleanup is still unverified, write the
  capture and fail with the run token and process group as cleanup
  resources.
- Classify path changes after a walk (ENOTDIR and other selected-file
  errors) as changed_since_walk instead of failing the capture.
- Treat a non-directory ancestor as proof that nothing existed beneath it.
- Report a before digest only for the file version it was read from.
- Derive stderr_truncated from stderr's own byte counts.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* wip(desktop): state view over a capture folder

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): keep failed file-handle closes owned for retry

Content reads pass retainFailedClose, so a handle whose close fails stays
owned by the content store; the capture retries those closes after it is
written and fails with the output folder as the cleanup resource if one
still cannot be closed.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* feat(desktop): read a captured application's state

Add inspect-desktop-application-state, a CLI command that reads a capture
folder into the application's state: every retained or changed file with
its role and reasons, a typed JSON view of each version (SQLite through the
shared worker, dconf through a private dconf dump, JSON, XML, key files,
text) and the kinds of change between versions (lines, values, keys, rows).

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): report process and handle cleanup failures together

When both the launched processes and a retained file's handle remain
unresolved after the capture is written, one cleanup error now lists both
reasons and both resource sets.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* feat(desktop): export a captured application as an agentenv computer app

Add export-desktop-application, which writes an agentenv bundle with one
computer_app environment from a capture folder and its state view: the
apt package, a boot launch matched on the captured window class with a
window ready check, owned paths from the state roles, a seed of the
baseline files, data hooks that call agentenv's add/get/reset helpers
with a typed JSON view on get, a skill, a README and a deploy smoke task.
The desktop CLI commands now load their services lazily.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): keep state views faithful to the capture

- Read key files, XML attributes, dconf groups and SQLite tables into
  dictionaries without inherited properties, so captured keys such as
  __proto__ stay data.
- Version databases with their write-ahead log as of each checkpoint, and
  stage only digest-verified bytes for the SQLite and dconf readers.
- Detect the format per version, report format changes, keep JSON null and
  empty containers as values, keep XML text and preserved whitespace, and
  mark truncated views (including XML depth) and comparisons of them.
- Number versions and changes by checkpoint index, decide baseline
  presence from the captured type, and keep tagged SQLite integers, text
  bytes and blobs distinct.
- Carry the capture's limitations and omitted content forward, match state
  directories by their home path, index changes once per capture, keep
  failed handle closes owned, and finish the CLI through the shared owner.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): keep coverage, logs and handles honest in the state view

- Read coverage flags only from formats whose readers write them, so JSON
  fields named truncated stay data.
- Fail a SQLite version whose write-ahead log existed but was not retained
  or does not match its digest, instead of reading the database alone.
- Close retained content on every exit, including cancellation, and report
  a close that still fails together with the primary failure.
- Finish the CLI with the canonical operation name.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): export only what the computer can install and seed

- Refuse packages not from the Ubuntu 24.04 archive, since the computer
  installs by name from that archive.
- Start the launch command in the captured working directory.
- Respell the home path only in files the state view read as text.
- Report files that were not retained instead of dropping them silently.
- Load captured dconf keys for apps that own no files.
- Keep home-level files as owned paths; rename reserved Python class names.
- Mark truncated SQLite and text views in the class's get view, and read
  file types the way the state view does.
- Release the output tree through a resource scope, and read seeds through
  an owner closed on every exit.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): keep staged folders owned, symlinked state roots and XML values

- Stage database bytes in a private runtime root released through a
  resource scope, so a failed removal keeps its owner and is reported with
  the read's outcome.
- Report cleanup facts and owners from desktop failures instead of
  wrapping them as a plain adapter error.
- Record the state directories as walked, in their physical spelling, and
  match roles against both spellings, so files in a symlinked state
  directory are not mistaken for selected documents.
- Keep whitespace-only XML leaf values; drop only formatting between
  elements.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): read XML in the exported app the way the state view does

Keep whitespace-only leaf values and xml:space="preserve" text in the
generated get view; drop only formatting between elements.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): release retained handles with their owners, read older captures

- Release retained-content handles whose close failed through a resource
  scope on every exit; a release that fails again reports the exact handle
  owners. A read that finished keeps its bytes when only its close failed.
- Accept captures written before state directories were recorded, and say
  in the state view's limitations that symlinked state directories may be
  misclassed for them.
- Compute each XML element's whitespace context once instead of scanning
  siblings for every text run.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): boot without the working folder, bound XML, accept mirrors

- Try the captured working directory only when an argument is relative,
  and start the app even when that folder is missing.
- Cut the generated XML view at REA's node and depth limits, and keep one
  unreadable file from failing data/get.
- Accept Ubuntu 24.04 mirrors, not only the canonical hosts; PPAs and
  other repositories are still refused.
- Read seeds through the retained-content owner's new signature.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): state view review round

- Stage a retained -journal beside its database so the SQLite worker
  accepts an inactive journal and refuses a hot one; a -wal or -journal
  that existed but was not retained (including one omitted at the
  baseline) makes the version unreadable.
- Keep tables that read when another fails, and let cancellation and
  unfinished cleanup propagate instead of becoming view errors.
- Read text as a key file only when every line parses as one.
- Rank a file named in a window title or selected by the caller as a
  document even when the application holds it open; match titles on
  file-name boundaries; leave the display name out of dconf matching.
- Bound JSON and key file views (4 MiB, 500 levels, exact numbers) and
  report too-large, missing and altered retained content separately.
- Add no version or change while a database stays absent.
- Read staged databases in place instead of copying them again.
- Give Evidence the same limitations as the result.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): export review round

- Load captured dconf keys without D-Bus: install dconf-cli, compile the
  existing and captured key files into the user database, and warn on
  failure instead of stopping the server.
- Start relative-argument launches in the captured working directory,
  the home included, since the framework launches from the app folder;
  respell the home itself and option values under it.
- Read views in a thread, skip files over 64 MiB, align the generated
  readers with the state view's, and close SQLite connections.
- Never own the home or a shared base folder; map a symlinked state
  directory's files back to their home spelling.
- Report omitted files and unretained opened folders.
- Name the module so it cannot shadow another, and keep the class off
  the module's own names; derive names the bundle check accepts.
- Write seeds as they are read, and remove an unpublished bundle on
  failure.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): capture review round

- Ask the launch process group and token carriers to exit before
  killing them, on errors too; report incomplete cleanup with its facts.
- Count descendants of the launch as started by the capture even when
  their environment cannot be read; treat a reused pid as a new process.
- Follow symlinked desktop entries; name a flatpak's state after its
  application id; match flatpak windows by name only.
- Stop on end of input; refuse empty, duplicate and reserved checkpoint
  names; require whitespace after the checkpoint keyword.
- Stay on each walk root's device, and never walk or retain `/` or a
  directory containing the home; say so in the limitations.
- Refuse a window manager that does not publish _NET_CLIENT_LIST.
- Remove retained content when a capture fails before it is written.
- Skip reading a file larger than the remaining content budget.
- Record apt's archive origin for each package source.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): read an unset client list as no windows when supported

xfwm4 leaves _NET_CLIENT_LIST unset while it manages no windows, so the
capture refused an ordinary desktop with nothing open. Read
_NET_SUPPORTED with the list: an unset list means no windows when the
window manager supports it, and the capture is refused only when it
does not. `xprop`'s "no such atom" output now reads as unset too.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): accept packages by apt's archive origin

Accept a package source when apt reports its origin as Ubuntu for a
noble suite, so mirrors count and PPAs or other repositories that merely
have "ubuntu" in their URL do not. Captures made before origins were
recorded fall back to Canonical's own archive hosts. Seed reads report
why retained content could not be used.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* feat(desktop): capture and export apps from vendor apt repositories

A closed-source app installed from its vendor's apt repository, such as
Typora, can now be captured and exported as a computer app.

- The capture records each non-Ubuntu repository listing the installed
  version (uri, suite, components from apt's sources files, one-line or
  deb822) and the key that signs it: the signed-by key, or the trusted
  key that gpgv shows verifies the repository's signed index. The key
  is retained with the capture.
- The capture records the packages owning the libraries the executable
  loads (DT_NEEDED with RUNPATH and the linker cache, through REA's ELF
  readers), since a vendor package may not depend on them.
- The export declares a verified vendor repository as an AptSource with
  its key, installs a vendor package's library packages, and adds
  --no-sandbox to an Electron app's launch, since a container denies
  Chromium's sandbox.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): report a locked database at once in data/get

A database the running app holds locked made each data/get wait sqlite's
five-second busy timeout before reporting it. Record the Typora run in an
agentenv computer in the verification.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* perf(desktop): detect key files without splitting the whole text

Read lines one at a time and stop at the first that a key file view
would drop, instead of splitting a file of up to 64 MiB into arrays
before its format is known.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): keep symlinked homes and state folders under the home in exports

- Respell a path under its state folder's logical spelling only when that
  spelling is under the captured home, so a symlinked HOME keeps its
  files; pair walked and logical state folders only when the capture
  lists the same number, and match the innermost folder first.
- When two files map to one home path, keep the one present before the
  capture and name the other in the limitations.
- Read key files in the generated data/get with the state view's rule,
  checked against it by running the helper under python3.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): end captures on zombies and keep cleanup owners

- A zombie or dead process no longer keeps the session open.
- Remove only the partial capture file this run created.
- Keep the exact owners of handles and processes whose cleanup failed on
  the returned error, so a retry can release them; test the published
  capture's cleanup-failure branch with mixed outcomes and retries.
- Release the application once even when the exit checkpoint fails.
- A cancellation before the capture is written removes what it retained.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): vendor package review round

- Match apt sources through `apt-get indextargets`, which covers flat `./`
  and `/` suites and gives each release file and sources entry.
- Accept a key whose signature verifies even when the release carries
  another signature without a key here; keep only the verifying key from
  a keyring holding several (OpenPGP packet splitter).
- Install the package from its repository's release (`name/<release>`),
  declare one source per URI and suite, support only the capture host's
  architecture, and refuse Ubuntu Pro repositories.
- List only library packages the computer can install; walk libraries only
  for vendor installs, with RPATH inherited as ld.so does, normalized
  paths, and DT_NEEDED bounded while reading.
- Put --no-sandbox after the program an env wrapper launches; keep the
  gpgv folder's owner when its removal fails; respect --max-file-bytes for
  keys; wait 0.25 s on a busy SQLite database in data/get.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* docs(desktop): keep the vendor spec's gpgv command on one line

A code span broken across lines left `<binary keyring>` for VitePress to
read as an unclosed HTML tag, so the docs build failed.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* feat(desktop): add a validated task to exported desktop applications

Each capture can now yield one agentenv task in its exported bundle. An
agent writes the task (a prompt plus declarative checks over the app's
data/get views); REA validates it and stays model-free.

- `describe-desktop-application-task` summarises a capture's net change
  per file (role, format, views before and after) and drafts checks.
- Checks: file presence, lines present/absent/counted, JSON-pointer values,
  SQLite rows and counts. REA keeps a task only if a check fails on the
  seed and every check passes on the captured end state; a file that was
  not retained at the baseline counts as absent, as the computer starts.
- `export-desktop-application --task` writes tasks/NAME.json (deploy,
  agent, skills, recording, prompt, verifier), a compiled verify.py that
  reads data/get, and an eval. A boundary test runs the verifier under
  python3 and checks it agrees with REA's evaluator on every check kind.
- Docs, spec and skill guidance, with the solve-rate recipe.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* test(desktop): keep the seed test in its own block

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* docs(desktop): record the task verifier driven in an agentenv computer

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* docs(desktop): record the Typora task run in an agentenv computer

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): keep task checks bounded, complete and attributable

- line_count counts lines holding a substring (contains) instead of
  matching a regular expression, which could stall the verifier on
  agent-written text and read differently in Python.
- value_equals of a whole object or array is undecided on a truncated
  view.
- The draft keeps a database whose rows changed under an unchanged hash,
  and a file whose truncated views match while it changed.
- A task file that cannot be read keeps the reader's detail, and a failed
  cleanup keeps the read failure as its primary.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): leave a file with one version out of the task draft

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* docs(desktop): update the task verification's test counts

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* docs(desktop): record the task solve rate with Claude Code and Sonnet 5.5

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* feat(desktop): capture and export apps installed from a downloaded .deb

capture-desktop-application --package-file reads the file's control fields
with dpkg-deb and records its SHA-256, size and dependencies when it holds the
installed package; the file itself is never kept. The library walk now also
runs for local installs.

export-desktop-application --package-url declares agentenv's
Download(url, sha256) for that file, its dependencies and library packages as
apt packages, and a run script that installs it with dpkg.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): seed app-named dotfiles and respell UTF-16 seeds

The capture now treats dotfiles in the home named after the application
(.varicad-cfg.ini, .notesrc) as state roots, so a file the app only reads
during the capture is still seeded. The exported seeding respells the
captured home in UTF-16 text files with a byte-order mark, keeping the mark.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): hold readiness until the app's own window shows

An exported app is ready only once a window of its class that the taskbar
lists is shown, so a splash screen of the class, which skips the taskbar, no
longer counts as the app being up.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* docs(desktop): record VariCAD captured, exported and run in an agentenv computer

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): keep exported views strict JSON for infinite and inexact numbers

The exported data/get spells infinite and negative-zero SQLite reals as REA's
SQLite reader does ("Infinity", "-Infinity", "-0"), and refuses a JSON file
holding a number that reading would change (1e999, integers past 2^53, -0,
rounded fractions) with the state view's own error, instead of a view with
an infinity in it.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): keep package-file facts tied to one file and URLs unechoed

- A --package-url refusal never repeats the URL, and credentials are checked
  before the scheme.
- The package file's identity must hold between dpkg-deb's read and the hash.
- A failed close keeps its cleanup owner even when the capture is cancelled.
- Readiness also ignores windows typed as splash screens.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): record database logs and keep state changes distinct

- A selected path that is not a directory brings its -wal and -journal as
  content roots, so the capture records whether they exist and retains them.
- The state view treats a file as absent only under recorded content roots
  and refuses a database whose log presence is unknown.
- JSON changes list containers too, so an array that becomes an object with
  the same members is a change.
- Key file entries escape the key as a JSON pointer segment, so [a/b] c and
  [a] b/c stay apart.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): keep watching through unread samples and late workers

- An unreadable window list is unknown, not zero windows, and is named in
  the limitations.
- Before ending the session, live run-token carriers no parent link reached
  are tracked; an unreadable process table leaves the exit unknown.
- An env prefix's assignments find the program and name its XDG folders.
- flatpak run options that take a value are skipped with it, -- is honoured
  and a /arch/branch suffix is dropped from the id.
- State directories include the entry's full id.
- Path options refuse empty values; roots count toward the entry limit.
- A capture file whose close failed stays owned and is retried on discard.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): bound apt sources, keep older captures and cleanup owners

- Sources files parse into one stanza per line or deb822 paragraph with its
  URIs and suites kept as lists, so no URI x suite product is built.
- Repository architectures and release are optional, so captures written
  before they were recorded parse; the export treats them as unrestricted
  and unknown.
- Library sources are matched against every index of a declared
  repository's URI, suite and components.
- Two failures side by side keep both causes and both cleanup owners, and a
  host file whose close fails reports a lease on its handle.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): match escaped key file entries and suggest containers through members

- The draft's key file lookup uses the state view's escaped `group/key`, so a
  key holding `/` or `~` still gets its suggestion.
- JSON and XML changes now list containers too; the draft suggests an added
  or removed container through its listed members, and a container only
  when none of its members is listed.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): read relative PATH entries from the launch folder

A program, or an empty or relative PATH entry, is resolved from the folder the
program starts in, as the launch does, so `env PATH=. app` with the entry's
Path still finds the app.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* perf(desktop): compare JSON views on one shared path

JSON and XML changes are found by walking both trees with one shared pointer
path, building a pointer only for a listed value, so memory follows depth
rather than every container's full path. A pointer over 4096 characters is
counted but not listed. A 256-level document with 4000-character keys went
from about 251 MiB of heap to under 1 MiB.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): keep JSON Lines as text in the exported reader

The exported reader parses the whole text before an inexact number makes it
JSON with an error, so JSON Lines with an integer above 2^53 stay text as in
REA. Over-long integer spellings are unsafe without converting them. The
guide no longer claims large integers keep their value.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): keep the state-path help free of dash-led words

The CLI alias check reads `-wal` and `-journal` in help text as short flags,
so the help names the write-ahead log and rollback journal instead.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): never record or export apt source credentials

- Source URIs lose any user name and password as they are parsed, the way apt
  splits them, and so do index-target URIs and descriptions and the sources
  apt-cache policy lists, so matching works whether or not apt prints them.
- A repository whose entry held credentials is marked
  `uri_credentials_removed`, and the export refuses it, or an older capture
  whose URI still holds them, with a reason that names no URL.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): look programs up without normalizing their paths

Program paths and PATH entries are joined rather than resolved, so `..` after
a symbolic link means what it means to the launch. The lookup moves to its own
module.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): note inexact JSON numbers with a flag, not a list

The exported reader only needs to know whether any number was inexact, so it
keeps a boolean instead of every rejected spelling.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): refuse older captures that still hold apt credentials

A capture written before credentials were removed counted the credentialed
repository's libraries as installable, so the export refuses it whole and asks
for a new capture rather than declaring packages no source offers. Recorded
policy sources are redacted in export messages too.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* test(desktop): keep the credential fixture on an example host

A login on a real host reads as a secret to the commit scanner, so the older
capture's fixture uses apt.example.com like the other credential tests.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): tidy looked-up paths and search relative entries only for env

Empty and `.` segments are dropped from a looked-up program path, which keeps
`/snap/bin/` entries recognisable as snaps, while `..` is still left for the
kernel. Relative and empty PATH entries are searched only in the PATH an `env`
prefix sets, which travels with the exported launch; the host's own PATH does
not.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): keep excluded and unwalked database logs unknown

The capture records the paths every walk left out, and the state view treats
a log as absent only under content roots the baseline walked completely and
outside those exclusions, so an excluded or unvisited log leaves the database
unread rather than read without it.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): judge JSON numbers after duplicate keys settle

The exported reader marks an inexact number instead of flagging it during the
parse, then looks for marks in the parsed value, so a number a later duplicate
key overwrote no longer refuses the file, as in REA.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): redact a repository's policy source when it names it

An older capture whose policy source matched no sources entry kept that text
whole, and the export named the repository by it; the export now names it
without any user name or password.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): never signal the launch group on unknown membership

When the current read cannot observe a carrier's process group, the carrier
is signalled on its own instead of letting an older process-table row grant
a group-wide SIGTERM.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): look programs up in the launch's order and refuse host-relative finds

The lookup searches PATH as the launch does, an empty entry meaning the
launch folder, so inspection and launch name the same program. A program found
only through a relative or empty entry of the host's own PATH is refused,
since the exported computer would not have it; an env prefix's PATH travels
with the command.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): count unchecked paths and keep logs behind them unknown

Each walk counts the paths it could not stat and the directories on another
device it did not enter, and the checkpoint records it as `unchecked_paths`.
The state view treats a log as absent only when the baseline left nothing
unchecked, so a log whose stat failed stays unknown.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* perf(desktop): scan parsed JSON with one iterator per level

The check for marked numbers walks the parsed value with an iterator per
nesting level instead of copying each container's children; a million-entry
array went from about 15.7 MiB to 8.1 MiB of peak traced memory.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): start a relative program from its captured folder

An exported launch whose program path is relative, such as `./app` from an
entry's Path, now changes to the captured working directory first, as it
already did for relative arguments.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* feat(desktop): read zipped documents and name XML elements in task checks

- A file that starts as a zip archive gets a `zip` view listing its entries in
  archive order, each with its own format and view, within limits on entries,
  bytes and expansion; the exported Python reader matches it.
- A pointer segment applied to an array may be a selector, `[KEY=VALUE]` or
  `[@KEY=VALUE]` for XML attributes, matching exactly one member, so checks
  name elements instead of positions that shift between saves and versions.
- `value_equals` takes an optional numeric `tolerance`, comparing numbers and
  numeric strings.
- Changes inside zip views are listed by selector, and the task draft suggests
  name-addressed checks.

FreeCAD's `.FCStd` is the first case: a hole cut into a plate is verified from
the zipped `Document.xml` on files from both FreeCAD 0.21 and 1.0.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): record the desktop entry's package and app profiles in any case

- A launch from a desktop entry records the package that owns the entry, so
  the export installs the app the entry starts (Writer, not only
  libreoffice-common); the program's own package is kept as
  executable_package when it differs.
- State folders match the app's names ignoring letter case, as direct
  children of the XDG folders and the home, so GIMP's ~/.config/GIMP profile
  is seeded and reset; roles follow the same rule.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* feat(desktop): read namespaced XML alike in REA and the exported verifier

The exported Python reader now names XML elements and attributes as the
document spells them (svg, text:p, sodipodi:docname, xml:space), with
namespace declarations kept as attributes, which is what REA's view already
produced. Export therefore accepts checks into Inkscape SVGs, LibreOffice
content.xml and namespaced XML inside zips, and the draft suggests them.

expat replaces ElementTree: one pass with namespace processing refuses what
REA's parser refuses, and a streaming pass builds the view within the same
node and depth limits. Text splits at CDATA, comments and processing
instructions as REA's DOM splits it. Fixtures are real Inkscape 1.2.2 and
LibreOffice 24.2 saves.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): install the program's own package and keep unknown owners unknown

- When the desktop entry's package does not own the program it runs, the
  export installs the program's package too. The capture records why it
  cannot (executable_package_reason), and the export then refuses.
- The export owns a state folder in the letter case the app wrote it, as
  the state roles already did, so data/get and data/reset cover a profile
  folder the app created during the capture.
- A dpkg-query that fails or exits 2 or higher leaves the package unknown
  instead of reading as "no owner".

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): keep selector checks undecided on partial views and pair members one to one

- A selector check is undecided while an array it searched may be missing
  members: a cut zip listing, or a truncated XML or entry view. Both
  evaluators agree.
- Diffs pair the members of two versions one to one, so two new elements
  can no longer both match the same old one and hide an addition.
- The task draft descends into JSON values and readable entries added
  whole, and never suggests an element by its position, last step included.
- The export's namespace refusal also checks XML entries inside the value a
  pointer names, such as the whole listing.
- The exported reader keeps REA's 500-level JSON depth limit, so one deep
  entry no longer hides the rest of the archive, and treats an entry whose
  data runs past its declared size as damaged.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): check approved packages against the repositories the export keeps

The capture approved library packages and the program's package against
every repository with a verified key, but the export can still leave a
repository out: its key dropped by the content budget, an architecture
restriction, or a conflicting key. Each repository now records the packages
only it supplies (`supplies`). The export drops stranded library packages
with a limitation, and refuses when the program's own package is stranded.
Captures without `supplies` behave as before.

The install limitations move to appExportInstallLimitations.ts to keep
appExportInstall.ts under the line limit.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): compare type changes in place, keep empty values and unread entries honest

- When an array becomes another type, its members are compared with what
  their pointers name there, so values that are still present no longer
  look removed.
- The draft checks an added empty array or object by equality.
- The exported reader's JSON depth check keeps one iterator per level and
  copies no wide list, back to the memory peak before the check.
- An entry whose view could not be read is no `null` value: the draft
  suggests no check on it, and a check into its view fails in both
  evaluators with the read error.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): decide entry view checks only on entries with a view, and walk JSON depth by level

- A check into an archive entry's view needs an entry read in a format
  with a view. A binary or unread entry's `view` of `null` no longer
  passes a `null` or absence check, in either evaluator, and the draft
  suggests no absence inside an entry that ends without a view.
- REA's JSON depth check keeps one iterator per level instead of queuing a
  pair per member, so 800,000 nulls need 18 MiB instead of more than 64.
  The helper came with the state view; its Python twin was fixed here.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): refuse an export whose desktop entry runs a program no package owns

When a package owns the desktop entry but no package owns the program it
runs, such as one in ~/.local/bin first on PATH, the capture keeps the
entry's package and records why the program cannot be installed. Export
refuses instead of installing a package that does not bring that program.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): bound zip entry reads, export metadata checks, and diff by the evaluator's pointer rules

- The exported reader inflates a zip entry at most 64 KiB at a time and
  stops a byte past its declared size, so a forged small size no longer
  holds the whole stream in memory (77.5 MiB to 0.1 MiB on a 32 KiB bomb).
- The namespace refusal applies only to checks that depend on an entry's
  XML, so checks on an entry's name, size or digest, or on its absence,
  export.
- Diffs find a member's counterpart by the evaluator's pointer rules, so a
  selector step across a type change no longer reports a present value
  removed.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): read at most 1,000 zip directory records, and index arrays once per diff

- Both zip readers now read the central directory a record at a time,
  keep the first 1,000 file records and count the rest, then hand the
  library an archive whose directory holds only those. Directories are
  told apart as zip.js does, so the Python reader stops listing
  attribute-marked directories as files. 600,000 entries now peak at
  1.3 MiB in Python (was 293.6 MiB) and need 24 MiB of heap in REA.
- The exported Python zip reader moves to appExportPythonZip.ts.
- Diffs look members up through an index built once per compared array,
  so 20,000 selector keys against 20,000 members take 31 ms, not 5.4 s.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* feat(desktop): pick seed and end by checkpoint, and keep the capture host out of bundles

- Export, task export and the task draft take --seed-checkpoint and
  --end-checkpoint, so one capture can make the seed in the app and then
  the edit; the defaults stay the baseline and the last version.
- Capture reads apt's lists folder and trusted keys from apt-config, so
  a user-space apt-get update under APT_CONFIG is found, and starts the
  app without AGENTENV_* variables.
- Capture records the host name and user. Export rewrites user@host, the
  host name as a whole name and the captured home in text, UTF-16 and
  dconf seeds, ships SEED_HOME=/home/user instead of the capture user's
  home, lists scrubbed and unscrubbable seeds, and refuses checks that
  name the host.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): check tasks against the shipped seed and scrub JSON and XML by value

- Task validation reads the seed as the bundle ships it, after the scrub,
  so a task whose end value the scrub writes into the seed is refused.
- JSON strings and XML text, attribute values, comments and CDATA are
  scrubbed as their decoded values and rewritten only when they change,
  so syntax stays valid and escaped identities are found.
- One leftover search covers every shipped file's path and contents,
  generated module and dconf keys included; the strict whole-name rule
  is kept for replacing only.
- A host named localhost is never replaced, but user@localhost is.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): resolve a record's selector keys together, and follow Zip64 locators without sentinels

- The diff resolves all of a record's selector-shaped keys in one lookup:
  conditions are normalized per field, selectors grouped by field set,
  and only the values asked for are kept, so retained memory grows with
  the keys, not members times field sets (68 MB to 5.5 MB, 76 MB to 4.9 MB
  on the reported cases).
- Both zip readers follow a Zip64 locator just before the end record
  whatever the classic record holds, as zipfile does, so valid Zip64
  archives with ordinary classic values read again. The exported
  module's synthetic tail carries a real Zip64 end record, so bytes that
  only look like a locator no longer make zipfile refuse it.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): scrub JSON values only, with a scanner whose stack does not grow with string length

JSON seeds are walked one string at a time, finding each closing quote
with indexOf and a backslash count instead of a backtracking regex, so a
16,000,000-character string no longer overflows the stack. Member names
are never rewritten, so two keys cannot collide; a name holding the host
leaves the file in unscrubbed_files.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): scrub dconf and UTF-16 seeds by format, search check values for the host, and gate checks on the selected ends

- dconf: the host scrub ran over the whole key file, so on a host named
  `true` `wrap=true` became an invalid `wrap=localhost`. Only decoded GVariant
  string values are scrubbed now; keys, groups, bytestrings, dictionary keys
  and object paths ship as captured and are reported.
- Task identity: the host search read the serialized check, whose field
  names (`file`, `kind`) and default ids matched hosts of those names. It now
  reads the check's string values only.
- Value checks: the text-file refusal read every recorded version; it now
  reads only the shipped seed and the end.
- UTF-16 seeds: the plain scrubber renamed JSON keys and XML names; the
  decoded text's format now picks the scrubber, keeping the byte order mark.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): pair members by identity first, build selectors lazily, and refuse oversized and deep text before building a view

- Pairing: an element with an identifier (name, id, xid, *:id) pairs only by
  it, so an unchanged id still names an edited element instead of a removal
  and an addition, and two objects of one type are never paired as a rename.
  Selectors keep the tag apart from each attribute condition and spell only
  the chosen one, so a long tag with many attributes no longer multiplies.
- Size: REA's detection and the exported reader decide JSON with a scanner
  that builds no value, and refuse a view over the parsed-view limit before
  building it, in files and zip entries alike.
- Deep text: the exported reader confirms the whole text is JSON before
  reporting a nesting depth error, as REA reads it.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): count a selector's matches over every sibling while identified elements choose only their identifiers

Identity-first pairing also dropped an identified sibling's other
attributes from the counts that prove a selector names one member, so a
shared attribute such as `color` or `fill` could be chosen though it matched
two siblings: the diff reported present elements removed and drafts lost
their checks. Counting now covers every attribute of every sibling; only the
choice is limited to an identified element's tag and identifiers.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): tell a UTF-16 seed's format without building it, and scrub XML without one piece per token

Choosing the scrubber for a decoded UTF-16 seed ran the full state
detection, which built the whole XML document (or JSON value), so a large
seed within the capture limit could exhaust memory at export. A syntax pass
now decides the format (the JSON token scan, and the XML parser's events
keeping only the open elements), and the XML scrubber copies out only the
spans it changes.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-06 10:01:25 +08:00
a7574d4274 fix(filesystem): settle a Windows ChangeTime before recording a baseline (#8979)
* fix(filesystem): settle a Windows ChangeTime before recording a baseline

Windows advances a file's ChangeTime shortly after it is written while
security components attach catalog and file-hash extended attributes. A
baseline captured during that advance disagrees with the next observation,
so an untouched file was reported as changed: "Root artifact changed before
inventory" and "Selected input changed while being read".

Dropping ctime on Windows is not an option because it is the only field
that catches a same-size rewrite whose modification time was restored.
Instead, keep ctime at full strength and stop capturing it mid-flight: on
win32 a ChangeTime still inside the drift window is observed again until two
consecutive observations agree, and the settled value becomes the baseline.

Applied where a baseline is captured and later compared: openRegularFile's
admitted metadata and the inventory root snapshot. The exhaustive process
capture walk is left alone, since settling there would delay every freshly
written file in the tree.

Refs #8975

Co-Authored-By: Claude Sonnet 5 <noreply@anthropic.com>

* fix(filesystem): wait out the drift window instead of a repeated value

Settling on two matching observations was not enough. Two reads taken before
Windows performs its delayed ChangeTime update agree with each other and
disagree with every later one, so an unchanged file still failed a later
check: the reported drift lands 0.3-1.0 s after the write, well past a pair
of reads 25 ms apart.

Decide on the observation's age in the drift window instead, and keep
observing until the ChangeTime itself has aged out. Both the first read and
the empty-observation path now go through the same window check.

The window-exit test could not fail before: its clock was frozen, so the
window never closed and the exit branch never ran. Advance the clock while
sleeping and cover a match that precedes a delayed update.

Refs #8975

Co-Authored-By: Claude Sonnet 5 <noreply@anthropic.com>

* fix(filesystem): configure Windows ChangeTime settle limits

REA_WINDOWS_CHANGE_TIME_DRIFT_MS, REA_WINDOWS_CHANGE_TIME_SETTLE_POLL_MS, and REA_WINDOWS_CHANGE_TIME_SETTLE_MAX_POLLS keep today's 2000 ms, 25 ms, and 40-poll defaults. Invalid values name the setting, current value, source, and range, and say to restart REA.

* fix(filesystem): settle on the selected environment and stop when cancelled

`settleChangeTimeBaseline` resolved its limits from `process.env`, but the
inventory already carries the environment its owner selected. A Windows
runtime with explicit settle settings therefore ran on ambient values or
the defaults, and an invalid ambient value could fail a runtime whose own
configuration was valid. `scanCanonical` now passes `options.environment`
through.

The wait loop also never observed the owning operation's signal, so a
cancelled inventory could keep polling for the whole drift window — up to
a minute at the configured maximum — and closing the artifact scope waited
on it. The loop now checks the signal before each poll and after the
sleep, and both call sites pass theirs.

Refs morluto/rea#8979

* fix(filesystem): keep the caller's typed error on cancellation

Checking the signal was not enough: `throwIfAborted` threw the raw
`signal.reason`, which `openRegularFile` passed through unchanged. Its
callers recognise cancellation through `RegularFileOperationCancelled`, so
a cancelled admission surfaced as an `ArtifactReaderFailure` with reason
`io` instead of a cancellation.

Let the seam supply the error a caller matches on, and have
`openRegularFile` pass its own cancellation type.

Refs morluto/rea#8979

* fix(filesystem): keep inventory cancellation typed during ChangeTime settle

scanCanonical passed the abort signal into settleChangeTimeBaseline without a cancellationError, so an aborted inventory threw the raw AbortError and analyze reported execution_failure. Inventory now throws ArtifactReaderFailure reason cancelled, which callers already translate as cancellation.

* fix(filesystem): skip ChangeTime settling for private PYZ images

External admission still waits out a fresh Windows ChangeTime. A private image REA just wrote is recorded as written, so a compressed PYZ spool does not add about a second per image.

---------

Co-authored-by: 2SinceJuly <202121119+2SinceJuly@users.noreply.github.com>
Co-authored-by: Claude Sonnet 5 <noreply@anthropic.com>
Co-authored-by: Cursor Agent <cursoragent@cursor.com>
Co-authored-by: morluto <76467478+morluto@users.noreply.github.com>
2026-11-06 07:57:14 +08:00
gensokyo-dev 0beedcd712 perf(mcp): add opt-in hot/cold tool discovery (#9046)
Add per-connection discovery that loads canonical named tools on demand while preserving the default full catalog. Bound discovery replies before changing visibility, preserve family exclusions and Evidence workflows, and reset visibility on HTTP reconnect.

Verified with focused protocol tests and real Codex CLI artifact investigations; token costs remain task-dependent, so the profile is opt-in.
2026-11-05 20:27:31 +00:00
APZNandgensokyo-dev ad518cff65 feat(artifacts): select extraction entries and output destination (#4031)
* feat(artifacts): select extraction entries and output destination

Refs morluto/rea#3490

* fix(artifacts): omit absent selection from execution parameters

* fix(artifacts): protect source directories and verify public selection

* fix(artifacts): keep optional selection inputs JSON-safe

* fix(artifacts): separate reader ownership from selected destinations

Validate complete reader inventory independently from collisions among selected output entries. Use occurrence-parent ownership instead of filename prefixes so independently owned PyInstaller entries remain selectable while nested-reader members remain refused. Validate advertised MCP schemas through the shared acceptance helper and add real PyInstaller/ASAR and excluded-entry regressions.

* fix(artifacts): advertise absolute extraction destinations

Reuse the shared host-absolute local path schema instead of an opaque refinement so SDK-converted JSON Schema preserves the runtime constraint. Extend the advertised-path and MCP-handler regression matrix for extract_artifact.output_root.

* fix(contracts): advertise unique extraction occurrence IDs

---------

Co-authored-by: gensokyo-dev <gensokyo-dev@users.noreply.github.com>
2026-11-06 03:28:05 +08:00
gensokyo-devandgensokyo-dev 8084916859 perf(eval): measure MCP catalog usage through the real Codex harness (#9035)
* perf(eval): measure MCP catalog usage through real Codex sessions

* fix(eval): control the active Codex code mode host

* fix(eval): reject unavailable host controls without hiding client errors

* test(eval): cover the supported default and actionable client errors

* docs(eval): record pinned Codex catalog and real package measurements

* fix(eval): pin matrix identity and retain failed trial observations

---------

Co-authored-by: gensokyo-dev <gensokyo-dev@users.noreply.github.com>
2026-11-06 02:25:34 +08:00
+27 fb453f2930 fix(mcp): support retained pseudocode summaries and paging (#5046)
* refactor(mcp): share official tool evidence registration

Route official tools through registerEvidenceTools and remove the duplicate
execution, progress, and Evidence delivery pipeline.

Preserve relationship coverage in the shared path and reuse the existing
source Evidence recording helper.

Validation: typecheck and 29 focused MCP tests passed.
Real native providers were not exercised.

* fix(mcp): support retained pseudocode summaries and paging

Allow procedure_pseudo_code to return an opt-in summary linked to its
retained complete Evidence. Extend inspect_analysis_view to page the
original pseudocode without repeating provider analysis.

Preserve default complete output and exclude delivery detail from
provider parameters and source Evidence identity.

Add regression coverage for large results, Unicode, null and empty
output, missing retention, transport-overflow recovery, and CLI paging.

Validation: 178 focused tests, build, check, docs:check, and test discovery
passed. Real stdio simulation reconstructed 98,000 code units exactly.
Real Ghidra, iTunes, and Claude Code verification remains unavailable.

Fixes #5032

* test(mcp): scope pseudocode contract lookup to official tools

* feat(desktop): capture and export apps installed from a downloaded .deb (#8954)

* feat(desktop): capture a Linux desktop application in use

Add `capture-desktop-application`, a CLI-only, Linux and X11 capture that
launches an installed desktop application, watches it while it is used and
writes capture Evidence plus SHA-256 addressed content:

- inventory: desktop entry, launch command, executable, package and its
  apt sources (or snap, flatpak, AppImage), Electron markers and candidate
  state directories;
- session: the launched process tree, client windows from xprop with the
  first application window time and a window match, and files held open;
- state: a stat walk of the home directory before launch, at checkpoints
  read from stdin, at stop and after exit, with created, modified, deleted
  and retyped paths and the content of changed files and state directories.

It refuses non-Linux hosts, missing DISPLAY or xprop, a non-empty output
folder and an application whose window is already open, and signals only
processes it started.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): own launched processes, confirm walk coverage and keep cancelled captures

- Launch through the owned provider path with a run token; release with
  SIGTERM, then the token-verified group cleanup, after every session.
  Processes without the token are never signalled; each records whether it
  carries it, and the session records whether cleanup was verified.
- Report creations and deletions only where a walk listed the nearest
  existing directory; count the rest as unconfirmed.
- Retain a file only when it is still the walked version, through owned
  no-follow reads; charge the budget only for new content; create files
  exclusively in a private output folder owned by the caller.
- Walk content roots outside the home directory, compare paths in their
  physical spelling, and run executables from the caller's directory.
- Refuse when the window list cannot be read, re-evaluate window ownership
  each sample, handle one queued request per sample with a bounded stdin
  queue, and write the capture with end reason `cancelled` on interruption.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): keep owned cleanup failures and fresh digests

- Allow a capture cancelled before any requested checkpoint to hold only the
  baseline.
- Retry an incomplete stop once; if cleanup is still unverified, write the
  capture and fail with the run token and process group as cleanup
  resources.
- Classify path changes after a walk (ENOTDIR and other selected-file
  errors) as changed_since_walk instead of failing the capture.
- Treat a non-directory ancestor as proof that nothing existed beneath it.
- Report a before digest only for the file version it was read from.
- Derive stderr_truncated from stderr's own byte counts.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* wip(desktop): state view over a capture folder

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): keep failed file-handle closes owned for retry

Content reads pass retainFailedClose, so a handle whose close fails stays
owned by the content store; the capture retries those closes after it is
written and fails with the output folder as the cleanup resource if one
still cannot be closed.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* feat(desktop): read a captured application's state

Add inspect-desktop-application-state, a CLI command that reads a capture
folder into the application's state: every retained or changed file with
its role and reasons, a typed JSON view of each version (SQLite through the
shared worker, dconf through a private dconf dump, JSON, XML, key files,
text) and the kinds of change between versions (lines, values, keys, rows).

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): report process and handle cleanup failures together

When both the launched processes and a retained file's handle remain
unresolved after the capture is written, one cleanup error now lists both
reasons and both resource sets.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* feat(desktop): export a captured application as an agentenv computer app

Add export-desktop-application, which writes an agentenv bundle with one
computer_app environment from a capture folder and its state view: the
apt package, a boot launch matched on the captured window class with a
window ready check, owned paths from the state roles, a seed of the
baseline files, data hooks that call agentenv's add/get/reset helpers
with a typed JSON view on get, a skill, a README and a deploy smoke task.
The desktop CLI commands now load their services lazily.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): keep state views faithful to the capture

- Read key files, XML attributes, dconf groups and SQLite tables into
  dictionaries without inherited properties, so captured keys such as
  __proto__ stay data.
- Version databases with their write-ahead log as of each checkpoint, and
  stage only digest-verified bytes for the SQLite and dconf readers.
- Detect the format per version, report format changes, keep JSON null and
  empty containers as values, keep XML text and preserved whitespace, and
  mark truncated views (including XML depth) and comparisons of them.
- Number versions and changes by checkpoint index, decide baseline
  presence from the captured type, and keep tagged SQLite integers, text
  bytes and blobs distinct.
- Carry the capture's limitations and omitted content forward, match state
  directories by their home path, index changes once per capture, keep
  failed handle closes owned, and finish the CLI through the shared owner.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): keep coverage, logs and handles honest in the state view

- Read coverage flags only from formats whose readers write them, so JSON
  fields named truncated stay data.
- Fail a SQLite version whose write-ahead log existed but was not retained
  or does not match its digest, instead of reading the database alone.
- Close retained content on every exit, including cancellation, and report
  a close that still fails together with the primary failure.
- Finish the CLI with the canonical operation name.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): export only what the computer can install and seed

- Refuse packages not from the Ubuntu 24.04 archive, since the computer
  installs by name from that archive.
- Start the launch command in the captured working directory.
- Respell the home path only in files the state view read as text.
- Report files that were not retained instead of dropping them silently.
- Load captured dconf keys for apps that own no files.
- Keep home-level files as owned paths; rename reserved Python class names.
- Mark truncated SQLite and text views in the class's get view, and read
  file types the way the state view does.
- Release the output tree through a resource scope, and read seeds through
  an owner closed on every exit.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): keep staged folders owned, symlinked state roots and XML values

- Stage database bytes in a private runtime root released through a
  resource scope, so a failed removal keeps its owner and is reported with
  the read's outcome.
- Report cleanup facts and owners from desktop failures instead of
  wrapping them as a plain adapter error.
- Record the state directories as walked, in their physical spelling, and
  match roles against both spellings, so files in a symlinked state
  directory are not mistaken for selected documents.
- Keep whitespace-only XML leaf values; drop only formatting between
  elements.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): read XML in the exported app the way the state view does

Keep whitespace-only leaf values and xml:space="preserve" text in the
generated get view; drop only formatting between elements.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): release retained handles with their owners, read older captures

- Release retained-content handles whose close failed through a resource
  scope on every exit; a release that fails again reports the exact handle
  owners. A read that finished keeps its bytes when only its close failed.
- Accept captures written before state directories were recorded, and say
  in the state view's limitations that symlinked state directories may be
  misclassed for them.
- Compute each XML element's whitespace context once instead of scanning
  siblings for every text run.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): boot without the working folder, bound XML, accept mirrors

- Try the captured working directory only when an argument is relative,
  and start the app even when that folder is missing.
- Cut the generated XML view at REA's node and depth limits, and keep one
  unreadable file from failing data/get.
- Accept Ubuntu 24.04 mirrors, not only the canonical hosts; PPAs and
  other repositories are still refused.
- Read seeds through the retained-content owner's new signature.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): state view review round

- Stage a retained -journal beside its database so the SQLite worker
  accepts an inactive journal and refuses a hot one; a -wal or -journal
  that existed but was not retained (including one omitted at the
  baseline) makes the version unreadable.
- Keep tables that read when another fails, and let cancellation and
  unfinished cleanup propagate instead of becoming view errors.
- Read text as a key file only when every line parses as one.
- Rank a file named in a window title or selected by the caller as a
  document even when the application holds it open; match titles on
  file-name boundaries; leave the display name out of dconf matching.
- Bound JSON and key file views (4 MiB, 500 levels, exact numbers) and
  report too-large, missing and altered retained content separately.
- Add no version or change while a database stays absent.
- Read staged databases in place instead of copying them again.
- Give Evidence the same limitations as the result.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): export review round

- Load captured dconf keys without D-Bus: install dconf-cli, compile the
  existing and captured key files into the user database, and warn on
  failure instead of stopping the server.
- Start relative-argument launches in the captured working directory,
  the home included, since the framework launches from the app folder;
  respell the home itself and option values under it.
- Read views in a thread, skip files over 64 MiB, align the generated
  readers with the state view's, and close SQLite connections.
- Never own the home or a shared base folder; map a symlinked state
  directory's files back to their home spelling.
- Report omitted files and unretained opened folders.
- Name the module so it cannot shadow another, and keep the class off
  the module's own names; derive names the bundle check accepts.
- Write seeds as they are read, and remove an unpublished bundle on
  failure.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): capture review round

- Ask the launch process group and token carriers to exit before
  killing them, on errors too; report incomplete cleanup with its facts.
- Count descendants of the launch as started by the capture even when
  their environment cannot be read; treat a reused pid as a new process.
- Follow symlinked desktop entries; name a flatpak's state after its
  application id; match flatpak windows by name only.
- Stop on end of input; refuse empty, duplicate and reserved checkpoint
  names; require whitespace after the checkpoint keyword.
- Stay on each walk root's device, and never walk or retain `/` or a
  directory containing the home; say so in the limitations.
- Refuse a window manager that does not publish _NET_CLIENT_LIST.
- Remove retained content when a capture fails before it is written.
- Skip reading a file larger than the remaining content budget.
- Record apt's archive origin for each package source.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): read an unset client list as no windows when supported

xfwm4 leaves _NET_CLIENT_LIST unset while it manages no windows, so the
capture refused an ordinary desktop with nothing open. Read
_NET_SUPPORTED with the list: an unset list means no windows when the
window manager supports it, and the capture is refused only when it
does not. `xprop`'s "no such atom" output now reads as unset too.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): accept packages by apt's archive origin

Accept a package source when apt reports its origin as Ubuntu for a
noble suite, so mirrors count and PPAs or other repositories that merely
have "ubuntu" in their URL do not. Captures made before origins were
recorded fall back to Canonical's own archive hosts. Seed reads report
why retained content could not be used.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* feat(desktop): capture and export apps from vendor apt repositories

A closed-source app installed from its vendor's apt repository, such as
Typora, can now be captured and exported as a computer app.

- The capture records each non-Ubuntu repository listing the installed
  version (uri, suite, components from apt's sources files, one-line or
  deb822) and the key that signs it: the signed-by key, or the trusted
  key that gpgv shows verifies the repository's signed index. The key
  is retained with the capture.
- The capture records the packages owning the libraries the executable
  loads (DT_NEEDED with RUNPATH and the linker cache, through REA's ELF
  readers), since a vendor package may not depend on them.
- The export declares a verified vendor repository as an AptSource with
  its key, installs a vendor package's library packages, and adds
  --no-sandbox to an Electron app's launch, since a container denies
  Chromium's sandbox.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): report a locked database at once in data/get

A database the running app holds locked made each data/get wait sqlite's
five-second busy timeout before reporting it. Record the Typora run in an
agentenv computer in the verification.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* perf(desktop): detect key files without splitting the whole text

Read lines one at a time and stop at the first that a key file view
would drop, instead of splitting a file of up to 64 MiB into arrays
before its format is known.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): keep symlinked homes and state folders under the home in exports

- Respell a path under its state folder's logical spelling only when that
  spelling is under the captured home, so a symlinked HOME keeps its
  files; pair walked and logical state folders only when the capture
  lists the same number, and match the innermost folder first.
- When two files map to one home path, keep the one present before the
  capture and name the other in the limitations.
- Read key files in the generated data/get with the state view's rule,
  checked against it by running the helper under python3.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): end captures on zombies and keep cleanup owners

- A zombie or dead process no longer keeps the session open.
- Remove only the partial capture file this run created.
- Keep the exact owners of handles and processes whose cleanup failed on
  the returned error, so a retry can release them; test the published
  capture's cleanup-failure branch with mixed outcomes and retries.
- Release the application once even when the exit checkpoint fails.
- A cancellation before the capture is written removes what it retained.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): vendor package review round

- Match apt sources through `apt-get indextargets`, which covers flat `./`
  and `/` suites and gives each release file and sources entry.
- Accept a key whose signature verifies even when the release carries
  another signature without a key here; keep only the verifying key from
  a keyring holding several (OpenPGP packet splitter).
- Install the package from its repository's release (`name/<release>`),
  declare one source per URI and suite, support only the capture host's
  architecture, and refuse Ubuntu Pro repositories.
- List only library packages the computer can install; walk libraries only
  for vendor installs, with RPATH inherited as ld.so does, normalized
  paths, and DT_NEEDED bounded while reading.
- Put --no-sandbox after the program an env wrapper launches; keep the
  gpgv folder's owner when its removal fails; respect --max-file-bytes for
  keys; wait 0.25 s on a busy SQLite database in data/get.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* docs(desktop): keep the vendor spec's gpgv command on one line

A code span broken across lines left `<binary keyring>` for VitePress to
read as an unclosed HTML tag, so the docs build failed.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* feat(desktop): add a validated task to exported desktop applications

Each capture can now yield one agentenv task in its exported bundle. An
agent writes the task (a prompt plus declarative checks over the app's
data/get views); REA validates it and stays model-free.

- `describe-desktop-application-task` summarises a capture's net change
  per file (role, format, views before and after) and drafts checks.
- Checks: file presence, lines present/absent/counted, JSON-pointer values,
  SQLite rows and counts. REA keeps a task only if a check fails on the
  seed and every check passes on the captured end state; a file that was
  not retained at the baseline counts as absent, as the computer starts.
- `export-desktop-application --task` writes tasks/NAME.json (deploy,
  agent, skills, recording, prompt, verifier), a compiled verify.py that
  reads data/get, and an eval. A boundary test runs the verifier under
  python3 and checks it agrees with REA's evaluator on every check kind.
- Docs, spec and skill guidance, with the solve-rate recipe.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* test(desktop): keep the seed test in its own block

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* docs(desktop): record the task verifier driven in an agentenv computer

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* docs(desktop): record the Typora task run in an agentenv computer

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): keep task checks bounded, complete and attributable

- line_count counts lines holding a substring (contains) instead of
  matching a regular expression, which could stall the verifier on
  agent-written text and read differently in Python.
- value_equals of a whole object or array is undecided on a truncated
  view.
- The draft keeps a database whose rows changed under an unchanged hash,
  and a file whose truncated views match while it changed.
- A task file that cannot be read keeps the reader's detail, and a failed
  cleanup keeps the read failure as its primary.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): leave a file with one version out of the task draft

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* docs(desktop): update the task verification's test counts

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* docs(desktop): record the task solve rate with Claude Code and Sonnet 5.5

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* feat(desktop): capture and export apps installed from a downloaded .deb

capture-desktop-application --package-file reads the file's control fields
with dpkg-deb and records its SHA-256, size and dependencies when it holds the
installed package; the file itself is never kept. The library walk now also
runs for local installs.

export-desktop-application --package-url declares agentenv's
Download(url, sha256) for that file, its dependencies and library packages as
apt packages, and a run script that installs it with dpkg.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): seed app-named dotfiles and respell UTF-16 seeds

The capture now treats dotfiles in the home named after the application
(.varicad-cfg.ini, .notesrc) as state roots, so a file the app only reads
during the capture is still seeded. The exported seeding respells the
captured home in UTF-16 text files with a byte-order mark, keeping the mark.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): hold readiness until the app's own window shows

An exported app is ready only once a window of its class that the taskbar
lists is shown, so a splash screen of the class, which skips the taskbar, no
longer counts as the app being up.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* docs(desktop): record VariCAD captured, exported and run in an agentenv computer

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): keep exported views strict JSON for infinite and inexact numbers

The exported data/get spells infinite and negative-zero SQLite reals as REA's
SQLite reader does ("Infinity", "-Infinity", "-0"), and refuses a JSON file
holding a number that reading would change (1e999, integers past 2^53, -0,
rounded fractions) with the state view's own error, instead of a view with
an infinity in it.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): keep package-file facts tied to one file and URLs unechoed

- A --package-url refusal never repeats the URL, and credentials are checked
  before the scheme.
- The package file's identity must hold between dpkg-deb's read and the hash.
- A failed close keeps its cleanup owner even when the capture is cancelled.
- Readiness also ignores windows typed as splash screens.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): record database logs and keep state changes distinct

- A selected path that is not a directory brings its -wal and -journal as
  content roots, so the capture records whether they exist and retains them.
- The state view treats a file as absent only under recorded content roots
  and refuses a database whose log presence is unknown.
- JSON changes list containers too, so an array that becomes an object with
  the same members is a change.
- Key file entries escape the key as a JSON pointer segment, so [a/b] c and
  [a] b/c stay apart.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): keep watching through unread samples and late workers

- An unreadable window list is unknown, not zero windows, and is named in
  the limitations.
- Before ending the session, live run-token carriers no parent link reached
  are tracked; an unreadable process table leaves the exit unknown.
- An env prefix's assignments find the program and name its XDG folders.
- flatpak run options that take a value are skipped with it, -- is honoured
  and a /arch/branch suffix is dropped from the id.
- State directories include the entry's full id.
- Path options refuse empty values; roots count toward the entry limit.
- A capture file whose close failed stays owned and is retried on discard.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): bound apt sources, keep older captures and cleanup owners

- Sources files parse into one stanza per line or deb822 paragraph with its
  URIs and suites kept as lists, so no URI x suite product is built.
- Repository architectures and release are optional, so captures written
  before they were recorded parse; the export treats them as unrestricted
  and unknown.
- Library sources are matched against every index of a declared
  repository's URI, suite and components.
- Two failures side by side keep both causes and both cleanup owners, and a
  host file whose close fails reports a lease on its handle.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): match escaped key file entries and suggest containers through members

- The draft's key file lookup uses the state view's escaped `group/key`, so a
  key holding `/` or `~` still gets its suggestion.
- JSON and XML changes now list containers too; the draft suggests an added
  or removed container through its listed members, and a container only
  when none of its members is listed.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): read relative PATH entries from the launch folder

A program, or an empty or relative PATH entry, is resolved from the folder the
program starts in, as the launch does, so `env PATH=. app` with the entry's
Path still finds the app.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* perf(desktop): compare JSON views on one shared path

JSON and XML changes are found by walking both trees with one shared pointer
path, building a pointer only for a listed value, so memory follows depth
rather than every container's full path. A pointer over 4096 characters is
counted but not listed. A 256-level document with 4000-character keys went
from about 251 MiB of heap to under 1 MiB.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): keep JSON Lines as text in the exported reader

The exported reader parses the whole text before an inexact number makes it
JSON with an error, so JSON Lines with an integer above 2^53 stay text as in
REA. Over-long integer spellings are unsafe without converting them. The
guide no longer claims large integers keep their value.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): keep the state-path help free of dash-led words

The CLI alias check reads `-wal` and `-journal` in help text as short flags,
so the help names the write-ahead log and rollback journal instead.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): never record or export apt source credentials

- Source URIs lose any user name and password as they are parsed, the way apt
  splits them, and so do index-target URIs and descriptions and the sources
  apt-cache policy lists, so matching works whether or not apt prints them.
- A repository whose entry held credentials is marked
  `uri_credentials_removed`, and the export refuses it, or an older capture
  whose URI still holds them, with a reason that names no URL.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): look programs up without normalizing their paths

Program paths and PATH entries are joined rather than resolved, so `..` after
a symbolic link means what it means to the launch. The lookup moves to its own
module.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): note inexact JSON numbers with a flag, not a list

The exported reader only needs to know whether any number was inexact, so it
keeps a boolean instead of every rejected spelling.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): refuse older captures that still hold apt credentials

A capture written before credentials were removed counted the credentialed
repository's libraries as installable, so the export refuses it whole and asks
for a new capture rather than declaring packages no source offers. Recorded
policy sources are redacted in export messages too.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* test(desktop): keep the credential fixture on an example host

A login on a real host reads as a secret to the commit scanner, so the older
capture's fixture uses apt.example.com like the other credential tests.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): tidy looked-up paths and search relative entries only for env

Empty and `.` segments are dropped from a looked-up program path, which keeps
`/snap/bin/` entries recognisable as snaps, while `..` is still left for the
kernel. Relative and empty PATH entries are searched only in the PATH an `env`
prefix sets, which travels with the exported launch; the host's own PATH does
not.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): keep excluded and unwalked database logs unknown

The capture records the paths every walk left out, and the state view treats
a log as absent only under content roots the baseline walked completely and
outside those exclusions, so an excluded or unvisited log leaves the database
unread rather than read without it.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): judge JSON numbers after duplicate keys settle

The exported reader marks an inexact number instead of flagging it during the
parse, then looks for marks in the parsed value, so a number a later duplicate
key overwrote no longer refuses the file, as in REA.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): redact a repository's policy source when it names it

An older capture whose policy source matched no sources entry kept that text
whole, and the export named the repository by it; the export now names it
without any user name or password.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): never signal the launch group on unknown membership

When the current read cannot observe a carrier's process group, the carrier
is signalled on its own instead of letting an older process-table row grant
a group-wide SIGTERM.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): look programs up in the launch's order and refuse host-relative finds

The lookup searches PATH as the launch does, an empty entry meaning the
launch folder, so inspection and launch name the same program. A program found
only through a relative or empty entry of the host's own PATH is refused,
since the exported computer would not have it; an env prefix's PATH travels
with the command.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): count unchecked paths and keep logs behind them unknown

Each walk counts the paths it could not stat and the directories on another
device it did not enter, and the checkpoint records it as `unchecked_paths`.
The state view treats a log as absent only when the baseline left nothing
unchecked, so a log whose stat failed stays unknown.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* perf(desktop): scan parsed JSON with one iterator per level

The check for marked numbers walks the parsed value with an iterator per
nesting level instead of copying each container's children; a million-entry
array went from about 15.7 MiB to 8.1 MiB of peak traced memory.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): start a relative program from its captured folder

An exported launch whose program path is relative, such as `./app` from an
entry's Path, now changes to the captured working directory first, as it
already did for relative arguments.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>

* fix(electron): reject non-directory scenario roots before launch (#8967)

* fix(contracts): align managed example MethodDef scope (#8966)

* docs(debugger): document configurable session limits (#8963)

* docs(debugger): document configurable session limits

* docs(debugger): clarify GDB control command deadlines

* docs(debugger): qualify configurable GDB output budget

* docs(debugger): clarify one-shot CLI settings scope

* docs(debugger): preserve repository line endings

* docs(testing): explain npm launcher selection in PowerShell (#8962)

* docs(mcp): explain PowerShell launch environment scope (#8961)

* docs(mcp): explain PowerShell launch environment scope

* docs(mcp): qualify saved setup selections and OpenCode environment

* fix(native): declare temporary filesystem writes for inspect_macho (#8959)

* fix(environment): retain ID ordering with missing clocks (#8957)

* fix(environment): retain ID ordering with missing clocks

* fix(environment): compare known creation clocks across gaps

---------

Co-authored-by: hhang <169027046+xu91102@users.noreply.github.com>

* fix(gpu): distinguish ELF string scan limits from corruption (#8955)

Co-authored-by: hhang <169027046+xu91102@users.noreply.github.com>

* fix(setup): replace the fixed Hopper download deadline with a stall timeout (#7150)

* fix(setup): replace the fixed Hopper download deadline with a stall timeout

Hopper package downloads aborted after a fixed 120 s, which was also the
largest deadline the download owner accepted. The current 32 MB Linux
package needs about 132 s at the reporter's sustained 245 KB/s, so setup
could never finish on that connection, and the timeout surfaced only as
Node's generic abort message.

Abort a download when no response bytes arrive for 30 s, or when it
outlives a 15-minute overall bound, with a tagged
HopperDownloadTimeoutError that names the URL, the limit reached and the
bytes received. Linux and macOS setup already relay a thrown download
error's message; the Linux publisher now keeps it for release metadata
and public key fetches instead of a generic verification failure.
Metadata and key fetches keep their 10 s bound.

Refs #7077

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(setup): keep the macOS release feed on the metadata limit

The stall-timeout change left the macOS release feed fetch on the
package download bounds. That fetch could then wait up to 15 minutes
instead of the 120 s it had, while the installation guide says release
metadata keeps a 10 s limit. Only the Linux publisher owned that limit.

Move the 10 s metadata limit into HopperDownload.ts beside the package
bounds. The Linux feed and key fetches use it, and the macOS installer
now passes it for its feed fetch through the installer host.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>

* fix(cli): parse environment-serve --port and --host like rea mcp --http (#7092)

* fix(cli): parse environment-serve --port and --host like rea mcp --http

environment-serve declared --port as a number, so incur coerced the flag text with Number(): an empty --port= bound an ephemeral port instead of failing, and 0x1F90 or 1e3 were reinterpreted. --host accepted whitespace. docs/cli.md says these flags resolve like rea mcp --http, which accepts only decimal port text and a non-empty trimmed host. The flags now use the same rules and are refused before binding.

* refactor(cli): reuse the shared MCP listener port and host schemas

* fix(adb): separate unresolvable paths and host capacity in adb spawn failures (#6188)

* fix(adb): name unexecutable adb paths in readiness refusals

When REA_ADB_PATH or the PATH-resolved adb is a directory or a file the
host refuses to execute, the version probe fails at spawn with EACCES or
EPERM. That fell through to the generic "did not report a usable version"
refusal, which named neither the path nor the cause.

Classify those spawn errors as binary_not_executable (provider rejection
executable_missing), name the selected path and errno, and give
remediation for the environment, PATH and host-policy cases. The generic
fallback now names the selected path too.

Fixes #5689

* fix(process): admit synchronous spawn errors as captured failures

Node throws spawn errors other than EACCES, EAGAIN, EMFILE, ENFILE and
ENOENT synchronously from execFile. execFileBytes called execFile inside
its Promise executor, so ENOTDIR or EPERM became a rejection without
capture fields and execFileOutputFailure returned undefined. Consumers
that classify by failure code, such as the adb version probe, could not
see the code, which left the adb EPERM branch unreachable.

Catch synchronous spawn errno errors at the capture boundary and attach
the same empty capture an asynchronous spawn failure carries. Argument
validation errors stay unadmitted.

The adb version probe now reports an ENOTDIR selected path, such as a
REA_ADB_PATH whose parent is a regular file, as a missing binary with
the filesystem error code instead of the generic version refusal.

* fix(process): expose spawn failures from the capture owner

execFileBytes knows when a command never started, but
ExecFileOutputFailure did not say so, so consumers reread raw syscall
and code fields and disagreed. Mark both the synchronous throw and an
asynchronous `spawn <path>` error with `spawnFailed: true`, and set
`path` on the synchronous error to match the asynchronous shape.
Argument validation errors stay unadmitted.

Consumers now use the owner field:

- inspectAdbClient never reports a spawn errno as `exit_code`. ENOENT,
  ENOTDIR, ELOOP and ENAMETOOLONG are `binary_missing`; EACCES and EPERM
  stay `binary_not_executable`; any other spawn errno, such as EINVAL,
  is `binary_not_executable` with a path-naming "could not be started"
  message. Each records `filesystem_error` and `path_source`. EACCES
  remediation also names parent directory search permission, and EPERM
  remediation no longer names host policy as the only cause.
- DarwinProcessRunTokenReader tags every not-started compiler as
  `spawn_failed`, not only ENOENT. EACCES, EPERM and ENOTDIR were
  previously `failed`.
- NativeDmgArtifactReader uses one not-started rule for both
  `processNotStarted` (previously `spawn ` only, so synchronous errors
  were missed) and the ENOENT unavailable/io split (previously any
  `spawn` prefix). Its fake hosts now reject with real execFileOutput
  spawn failures.

* fix(process): classify spawn failures consistently across consumers

Admit synchronous and asynchronous spawn errnos through one helper that
requires an errno and a `spawn` or `spawn <path>` syscall. The
synchronous shape now also gains `spawnargs`, so both shapes match.

Use the owner's `spawnFailed` fact in the remaining consumers:

- inspectAdbClient reports exhausted host capacity (EAGAIN, EMFILE,
  ENFILE, ENOMEM) as a host failure to retry and no longer tells the
  caller to change REA_ADB_PATH. Path-resolution errnos come from a
  predicate the filesystem owner exports.
- runAdbCapture says adb could not be started instead of claiming an
  exit code for a process that never ran.
- The Darwin compiler probe words every spawn_failed outcome as a start
  failure, not a compilation failure.
- Asset catalog inspection treats any assetutil that never started as
  unavailable, not only ENOENT.

* fix(process): report host spawn capacity as a retryable constraint

Spawn errnos that report exhausted host capacity (EAGAIN, EMFILE, ENFILE,
ENOMEM) were classified by adb readiness alone. assetutil reported them as
an unavailable tool, which marked inspect_asset_catalog unavailable in the
session, and adb commands reported them as protocol failures.

Classify them once in the process capture owner and report a retryable
capacity constraint with recovery advice from assetutil and adb commands.

* docs(adb): describe host capacity failures from device operations

* fix(adb): report exhausted host spawn capacity as runtime unavailability

A host that cannot start adb for lack of process, memory or descriptor
capacity is not a configuration problem. Give it its own failure code and
map it to the runtime_unavailable provider rejection instead of
not_configured.

* fix(adb): report probe-time host capacity as a retryable constraint

A device operation whose adb version probe could not start for lack of host
capacity was refused as capability_unavailable without retryable. It now
reports the same retryable capacity constraint as a later adb command.

* fix(adb): keep the selected adb path in probe-time capacity errors

The retryable capacity constraint raised at the version probe dropped the
selected_binary and path_source diagnostics the refusal used to carry.

* refactor(adb): keep the spawn-failure fact to adb consumers

Restore the DMG reader, Darwin compiler probe and assetutil to main. The
capture owner still marks a never-started command, including the spawn
errors Node throws synchronously, and only the adb readiness probe and
adb commands read that fact.

* test(adb): assert spawn-failure facts instead of refusal wording

The new adb tests compared complete refusal sentences and banned an old
phrase. They now check the errno, selected path, path source and the
owner's spawn-failure marker, so wording edits do not break them.

* fix(adb): own one host-capacity remediation and cover the spawn route

The host-capacity constraint and the configuration failure each carried their own remediation sentence. AdbConfiguration now owns the text and both use it, so the constraint's remediation.action equals diagnostics.remediation.

The synchronous spawn-throw test now runs on Node's execFile route and on the owned spawn route adb uses (stopSignal). The provider test covers inspect_adb_client under EMFILE next to list_adb_devices, and the docs say which operations report the retryable capacity constraint and which report runtime_unavailable.

* fix(process): report EMFILE and ENFILE spawn failures without stdio

After an EMFILE or ENFILE spawn failure Node creates no stdio, so the
owned stop-signal route threw a TypeError while reading the streams and
the later spawn error went unhandled. Attach the error listener first and
capture absent streams as empty, so adb reports retryable host capacity.

* fix(adb): keep a completed push when host capacity stops its digest check

A capacity failure starting sha256sum came back as a retryable error even
though adb push had already written the file. Repeating the request with
overwrite=false is then refused because the destination exists.

Return the receipt with an unavailable device digest and name the capacity
failure in its limitations, so the caller is told the transfer is unverified
rather than advised to retry.

* docs(adb): list host capacity as an unverified push case

---------

Co-authored-by: t <t@t>

* test(gdb): expect configurable stream truncation diagnostics (#8965)

* test(gdb): expect configurable stream truncation diagnostics

* build(gdb): include prerequisite duplicate-import repair from #8884

* fix(javascript): resolve module-level Electron options in functions (#8960)

* fix(javascript): resolve module-level Electron options in functions

* fix(javascript): limit module option ancestry walk

* fix(javascript): preserve uncertain captured argument ordering

* fix(javascript): retain hoisted activation uncertainty

* fix(javascript): retain function ownership through loops

* fix(javascript): account for classic global activations

* fix(javascript): bind first activations to lexical identities

* fix(javascript): retain uncertain global activation timing

* fix(javascript): isolate receiver facts and share computed reads

* fix(javascript): retain projected and opaque global activations

* fix(javascript): refresh activation bounds as opaque effects grow

* fix(ci): format website watch directories without changing configuration

* fix(javascript): share source reads across opaque-effect updates

* fix(javascript): retain constructed-code global activation bounds

* fix(javascript): share runtime activation and receiver facts

* fix(javascript): reuse pattern reads and function positions

* fix(javascript): isolate copied paths and preserve runtime reads

* style(javascript): format migrated reference imports

* fix(javascript): normalize constructor activation and receiver effects

* fix(javascript): retain aliased receiver timing and lexical global this

* fix(javascript): preserve effect-free receiver identity across activations

* fix(javascript): retain outer activation and prototype effects

* fix(javascript): index implicit reads without deep path rescans

* fix(javascript): retain aliased prototype and parameter read uncertainty

* fix(javascript): index reflected reads through intrinsic invocation facts

* fix(javascript): retain unresolved global activation reads

* chore: refresh PR branch after review fix publication

* fix(javascript): retain projected receiver reads and cache method facts

* fix(javascript): retain inherited and implicit activation reads

* fix(javascript): retain caller-owned this uncertainty

* fix(javascript): retain reflected reads with unresolved spread arguments

* fix(javascript): preserve enclosing activation for decorators

* fix(javascript): track intrinsic literal prototype effects

* fix(javascript): retain catch activation from implicit reads

* perf(javascript): reuse effective keys for projected reads

* fix(javascript): retain possible caller-owned ambient effects

* fix(uninstall): preserve caller-selected Kuna caches during purge (#7921)

* fix(uninstall): keep a managed cache namespace whole when it holds a caller-selected Kuna cache

purge --purge-data reported a REA_KUNA_CACHE_DIR selection below the default Kuna cache as retained, then removed it together with its parent namespace. A namespace that contains the selection is now retained and reported, so the retained report is true.

Fixes #7344

* fix(uninstall): also keep a namespace equal to, or reached by symlink traversal from, the selected Kuna cache

Compare the namespace and the selection with the same normalization, treat an equal path as contained, and resolve existing paths before planning so a symbolic link followed by .. is judged by where it leads.

* fix(uninstall): judge a selection with parent traversal where the filesystem resolves it

Collapsing .. lexically contradicts the existing rule that parent traversal after a symbolic link leads elsewhere, and broke the retained-through-symlink-traversal test. Compare spellings without .. directly and resolve existing paths for the rest, so the symlink-parent case still purges the default cache while a selection that resolves into a managed namespace is retained.

* fix(uninstall): keep a namespace whole when the selection's location is unknown

A realpath failure other than ENOENT/ENOTDIR (for example EACCES under an
inaccessible parent) no longer counts as "absent". Each namespace that may
contain the caller-selected Kuna cache is retained instead of purged.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>

* fix(changed-behavior): withhold equality for unknowns and contradictions (#7624)

find_changed_behavior derived behavior_status from each process
comparison's aggregate status alone. An unchanged comparison whose
first_divergence was unknown (residual unknowns prevent proving no
divergence) and a consistent contradiction comparison both fell
through to observed_unchanged, with no unresolved finding and no
changed-behavior registry unknown.

An unchanged comparison with unknown divergence now counts as unknown
and adds one comparison-level unresolved first_divergence finding
carrying its reason, as artifact comparisons already do for coverage.
A contradiction status makes the aggregate unknown, and contradiction
dimensions are classified and counted as contradictions instead of
unresolved branches. Complete unchanged comparisons stay
observed_unchanged and changed comparisons with unknown localization
stay observed_changed.

Fixes #7384
Fixes #7383

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>

* fix(process): reject contradictory filesystem capture facts (#7631)

* fix(process): reject captures whose top-level filesystem facts contradict their checkpoints

A process capture records its filesystem state twice: files_before,
files_after and filesystem_effects at the top level, and the initial
and final filesystem_checkpoints. Validation never reconciled the two,
and comparison reads only the checkpoints. A caller-authored capture
recording a created file at the top level while its final checkpoint
was empty was therefore accepted and compared as unchanged.

Semantic validation now requires the initial checkpoint to match
files_before with no effects, and the final checkpoint to match
files_after and filesystem_effects. The native producer builds both
representations from the same snapshots, so produced captures are
unaffected; consistent created-file captures still compare as changed.

Fixes #7371

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* test(process): cover file-list checkpoint mismatches independently of effects

Every rejected case in the checkpoint-consistency test also disagreed on
effects, so removing both file-list comparisons left it passing. Add
initial and final checkpoint cases whose file lists alone disagree while
effects and coverage accounting stay valid.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>

* fix(process): report deadlines expiring during final cleanup (#7635)

* fix(process): report a deadline that elapses during final cleanup as a timeout

runOwnedCommand checked its absolute command deadline before awaiting
process cleanup, but on the ordinary successful path it consulted only
the caller's cancellation signal afterwards. A command whose deadline
expired while successful cleanup was still awaited therefore resolved
as success.

After cleanup, an elapsed deadline now throws OwnedCommandFailure with
reason "timeout" and the completed snapshot, as docs/tool-design.md
requires a final signal check after the last awaited finalization step.
Existing primary failures, caller cancellation and incomplete-cleanup
classification keep their precedence.

Fixes #7369

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* test(process): drive the cleanup-deadline regression with controlled time

The regression test gave output collection 100 ms of real time before
the deadline. On a busy worker the deadline could expire during
collection instead, taking a different failure path and failing the
test even with the fix. Use fake timers, wait until cleanup has
started, then advance past the deadline and release cleanup, so the
ordering no longer depends on worker speed.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>

* fix(enhanced): bound batch decompile input size (#5937)

* fix(artifacts): handle early ASAR extraction cancellation (#5672)

* fix(artifacts): own source errors during output setup

* fix(artifacts): join silent source destruction before returning

* fix(artifacts): retain source cleanup failures with primary errors

* fix(artifacts): join source finalization and classify secondary failures

* fix(firmware): separate source cleanup from output rollback

* fix(artifacts): retain live source cleanup dependencies

* fix(artifacts): preserve source failure completion and semantics

* fix(artifacts): retain scope cleanup owners and typed failures

* fix(artifacts): keep cleanup classification and admission recovery

When the operation completed and only scope cleanup failed, keep the cleanup failure's own reason instead of reporting io, matching main (fixes artifactProvider.cleanupRetry). When a typed primary is rebuilt with pending scope cleanup, carry its userMessage and ASAR header admission so callers keep the configured ceiling and setting.

* fix(artifacts): translate plain file-close failures through the reader path

The outer file-cleanup branch rebuilt every ArtifactFileCleanupFailure as a
ProviderAdapterError, so dyld reads lost their io, unavailable, format and
cancelled reasons and their exact file-cleanup cause. Compose separately only
when the failed primary owns its own translation (a domain error, source
failure or scope cleanup failure); raw and reader primaries are already
projected by the file failure with its exact lease.

* fix(artifacts): bound source destruction by cancellation and keep wrapper admission

After cancellation, SafeOutputTree.write could wait indefinitely for a source
whose destruction did not settle, both in the destroy join and in the
iterator's wait for close. Both waits now end at cancellation plus a fixed 1 s
grace, modeled on the process-output closure grace. A destruction that
outlives it is reported as incomplete source cleanup under an exact lease that
releases only once closure is observed without a late error.

ArtifactResourceCleanupFailure and SafeOutputSourceFailure now keep the
primary's admission, matching withCleanup.

* fix(artifacts): keep one settled wait while observing a stuck source

observeClosure raced the same pending close promise against a new timer every
10 ms, so a source whose destruction never settled accumulated one reaction per
poll for as long as it stayed open. Each poll now waits on its own promise that
the close listener or the unref'd timer settles, leaving one pending wait and
one close listener. The lifecycle test also asserts that a late close releases
the retained owner without an explicit retry.

* fix(artifacts): settle pending reads before cancellation

* test(artifacts): observe the consumed ZIP iterator on cancellation

* test(artifacts): validate projected cleanup resources before sorting

* test(mcp): reserve parent capacity for timeout recovery

* fix(artifacts): contain ASAR cancellation before output consumption

* test(artifacts): hash ASAR cancellation fixture bytes

* fix(decompile): retain inventory limitations and selection (#8466)

* fix(decompile): retain inventory limitations with the latest selection

The manifest and decompile index dropped procedure-inventory
limitations, so a directory separated from its Evidence response could
not explain why functions were selected or omitted. Keep those
limitations on the manifest and in a latest_run index record that also
names the filter and counts that produced them. Older runs remain
represented only by their retained function records.

Fixes #8355

* test(decompile): surface export errors and check function caveats

Address review findings on the inventory-limitation regression:

- Throw the typed export error instead of returning from a failed Result.
- Assert historical function records keep their own pseudocode caveats
  and do not receive the latest inventory warnings.

* fix(pyinstaller): leave PE carrier binary members unmarked (#6730)

The Windows bootloader sets no execute bit on extracted ARCHIVE_ITEM_BINARY
members (the S_IXUSR fchmod in pyi_archive.c is #ifndef WIN32). Mark type b
members executable only when the carrier dialect is posix.

* fix(jeb): reconnect after stale MCP sessions (#3754)

* fix(jeb): reconnect after stale MCP sessions

* fix(jeb): preserve failures for overlapping MCP requests

* fix(jeb): make cleanup operations explicit and stabilize timeout fixtures

* fix(setup): flag unresolved migrated Claude Desktop storage (#8971)

* fix(setup): flag unresolved migrated Claude Desktop storage

* fix(setup): preserve Claude MSIX process view when config is unresolved

* fix(enhanced): restore batch input record limit

* docs(tool-design): audit agent workflow guidance (#8439)

* docs(tool-design): audit agent workflow guidance

* docs(tool-design): check deployed guidance versions

* fix(cli): align ADB directory and package query schemas (#8974)

* fix(cli): align ADB directory and package query schemas

* fix(cli): preserve ADB selector correction details

* fix(devicetree): reject duplicate node paths in Evidence (#8970)

* fix(pe): classify valid DOS targets as unsupported (#7530)

fix(pe): classify confirmed DOS targets as unsupported

Signed-off-by: Rudy Celekli <rudy@gradiahq.com>

* fix(native): reject nonzero reserved ELF dynamic symbols (#7528)

fix(native): validate the reserved ELF dynamic symbol

Signed-off-by: Rudy Celekli <rudy@gradiahq.com>

* fix(evidence): traverse large source link sets safely (#8457)

* fix(verification): use inspected Ghidra JDK (#8440)

* fix(mcp): clarify retained dossier handoff in crash prompt (#8437)

* fix(evidence): clarify unsupported view recovery (#8412)

* fix(evidence): clarify unsupported view recovery

* fix(evidence): explain sensitive capture view refusal

* test(ghidra): check regex recovery at its owning boundary (#8578)

* test(ghidra): check structured snapshot profile mismatch (#8536)

* test(ghidra): check retained historical snapshot evidence (#8381)

* test(ghidra): check retained historical snapshot evidence

* test(ghidra): select historical observations by address

* test(cli): cover Frida argument admission and spawn ordering (#3356)

* fix(cli): reject spawn arguments in Frida attach mode

* test(cli): remove redundant Frida recorder assignments

---------

Co-authored-by: Kaoru0822 <208281322+kaoru0822-kitauji@users.noreply.github.com>

* fix(ghidra): report restricted-host temp write denial on Windows (#8889)

* fix(ghidra): report restricted-host temp write denial on Windows

Add a Windows doctor check that creates and deletes a file under os.tmpdir(), and classify a denied java_home.save in Ghidra startup output with its path, Win32 error 5, and TMP/TEMP remediation. The probe covers REA's own process only; a host that restricts only child processes is reported from the child's output at startup.

Fixes #7075

* fix(ghidra): probe the session root and retain failed probe cleanup

The Windows doctor temp_directory probe now writes under ghidraSessionRoot(), the same root Ghidra session runtimes use, instead of os.tmpdir(), which can differ when the inherited temp path has a dot-prefixed element. A probe file whose removal fails is retained on the doctor resource owner so doctor shutdown retries the removal; the result still reports its path.

* fix(cli): normalize exit status on worker cleanup failure (#8049) (#8050)

* fix(cli): normalize exit status on worker cleanup failure (#8049)

* test(cli): verify SDK output status and finalization rejection on exit

* ci: retrigger checks

---------

Co-authored-by: Sarthak Pandey <sarthak@email.com>

* fix(gdb): keep inferior-tty verification for read-only queries (#5539)

* fix(gdb): keep TTY verification across read-only inferior-tty inspection

The console command path cleared `inferiorTtyVerified` before dispatching
any command whose text merely mentioned `inferior-tty`, so the read-only
`show inferior-tty` query permanently revoked a persistent session's
verified output sink; no in-session path ever restored the flag, and a
later close of a live session failed detach verification with
capability_unavailable.

Exempt the exact read-only query forms (`show inferior-tty` and the MI
`-inferior-tty-show`) from the output-mutation predicate; every other
command mentioning the TTY setting keeps revoking, so mutating commands
still fail closed and detach keeps re-reading the live TTY before
detaching. Cover the query forms, composite commands, and the
inspect-then-close detach path with regression tests.

Fixes #5099

* test(gdb): classify show inferior-tty in the one-shot table and rename the TTY classification table

- Add a 'show inferior-tty' row to the 'classifies one-shot GDB
  commands' table: the read-only query no longer invalidates the detach
  proof, a user-visible one-shot behavior change.
- Rename the 'classifies read-only inferior TTY queries as non-mutating'
  table to 'classifies inferior TTY commands' since two of its rows are
  mutation cases.
- Assert via the existing recorded-commands array that the inspected
  'show inferior-tty' text is actually dispatched, and add an
  execute-path assertion that the MI '-inferior-tty-show' form leaves
  the verified-sink flag intact (defensive exemption: REA's own MI calls
  do not route through this gate).

---------

Co-authored-by: akushonkamen <akushonkamen@users.noreply.github.com>

* fix(browser): report an out-of-range generated position as a selection fault (#7133)

trace_web_source_location reported a well-formed generated_position past
the end of the selected script as invalid_format on generated_position,
with no bounds, so callers were told their input was malformed and not
which coordinate to change. Report out_of_range on the line or column
that is past the end, with its valid bounds, as export_web_scripts and
inspect_web_network_capture now do for their selections.

The position scan now returns the bound it ran past, so the offset and
the reported limit come from one pass and cannot disagree on line
terminators.

Fixes #7132

* fix(captures): classify unresolvable capture paths as capture_path input (#7814)

* fix(captures): classify unresolvable capture paths as capture_path input

Fixes #7636

* test(captures): cover unresolvable descriptor paths

---------

Co-authored-by: Abelo9996 <Abelo9996@users.noreply.github.com>
Co-authored-by: morluto <76467478+morluto@users.noreply.github.com>

* fix(apple): preserve exact integer precision with post-table plist objects (#8910)

* fix(javascript): resolve electron findings through aliases of interop results (#8914)

* fix(javascript): resolve electron findings through aliases of interop results

* fix(javascript): resolve interop aliases iteratively and check target mutations

* fix(javascript): retain possible writes through uncertain aliases and guard positive reads

* perf(javascript): cache alias change status across semantic interop lookups

* fix(javascript): transient Windows private-runtime source-transfer (#8769)

* fix(javascript): transient Windows private-runtime source-transfer

Parent source-transfer into the Windows private runtime root failed with
EPERM on path-based exclusive create. Write through a native transient
private-runtime path that closes the handle after flush so per-job rm
still works, and yield around the sync write so abort deadlines can fire.

* fix(javascript): yield timer phase before Windows source-transfer write

* fix(il2cpp): reject module image references outside retained inventory (#8956)

* fix(ida): admit Docker host-gateway names as local MCP hosts (#8932)

Containerized REA reaches an IDA MCP server on the container host through
host.docker.internal (Docker, Podman compatibility) or
host.containers.internal (Podman). The HTTP registration refinement only
admitted localhost, 127.0.0.1 and [::1], so doctor reported the valid
gateway registration as invalid_configuration.

Admit both gateway names in the registration's local-host set. The
refinement still requires http or https, no URL credentials, and refuses
every other host.

Fixes #8925

* fix(mcp): report target after failed open (#8613)

* fix(mcp): report target after failed open

* test(session): cover failed open receipt ownership

* test(session): verify restored target receipt

* test(mcp): retain target on snapshot mismatch

* test(mcp): retain oversized open failure receipts

* test(cli): avoid continuing session receipt in one-shot errors

* fix(mcp): report provider after failed switch

* test(ghidra): verify failed open preserves annotations

* test(mcp): join queued receipt request before cleanup

* test(session): assert open failure receipts in lifecycle suites

* test(session): keep open-failure receipt checks within function limits

Move the provider-collision case and snapshot fixture setup out of the
functions that grew when both failure receipts were asserted.

---------

Co-authored-by: Cursor Agent <cursoragent@cursor.com>

* fix(prompts): include existing static artifact investigation routes (#8972)

* fix(prompts): include existing static artifact investigation routes

* fix(prompts): preserve workflows in existing family scopes

* fix(prompts): require readers for Apple resource routes

* fix(rizin): keep debug targets off the debugger command stream (#8647)

* fix(rizin): keep debug targets off the debugger command stream

A Rizin debug target inherited Rizin's stdin, which is REA's command
stream. Once resumed, a target that reads stdin consumed REA's commands,
so close returned cleanup_incomplete and the one-shot CLI hung.

Route the target's stdin to the caller-selected TTY alongside stdout and
stderr. Before detaching, refuse a target whose stdin is still the command
stream, so a Rizin or backend that ignores the key gets a specific,
retained failure instead of a resumed target and a timeout.

Fixes #8642

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* test(rizin): keep the stdin test launcher's descriptors under dash

The launcher gated its target with `cat "$2" >/dev/null`. dash applies a
simple command's redirection to the shell itself until the command returns,
so on Ubuntu the waiting shell's fd 1 was /dev/null, and that shell is the
target REA reads in /proc. All 8 Linux-gated tests then failed the existing
output-descriptor check. macOS /bin/sh is bash, which redirects only in the
forked child, so this did not show locally.

Gate without any redirection. Production code is unchanged.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* test(rizin): reject unmodeled commands and own cleanup at acquisition

Address review of the stdin regression tests.

The launcher accepted any unknown line, so the marker that followed could
complete it, and assertions only checked that commands were present. An
added `dc` or a repeated `olj` still passed. It now records an unknown line
and exits, and the tests pin the exact command sequence.

Cleanup hung off module state assigned after setup finished, so a failed
setup left its directory and terminal child behind. Each resource now
registers its own finish hook when acquired, using createTestTempDirectory.

Success checks throw the typed error instead of asserting `.ok`, and the
refusal probe no longer sits inside a loop and conditional.

Production code is unchanged.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>

* fix(ci): align tests with current evidence contracts

* feat(native): report binary hardening for ELF, PE and Mach-O (#8524)

* feat(native): report binary hardening for ELF, PE and Mach-O

Documents inspect_binary_hardening and its CLI equivalent, including
per-property states, supporting evidence, read budgets, and one report
per Mach-O slice. Explains that missing protection imports remain
unknown, signature presence does not establish validity, and hardened
runtime requires inspect_signature. Adds hardening links throughout the
documentation. The supplied diff also removes the advanced CodeQL
workflow and configuration, along with snapshot-binding mismatch
guidance.

* fix(native): validate declared payloads and dynamic tables before hardening rows

Run the shared range checks for ELF, read imports from the dynamic tables
rather than section metadata, and keep an unresolved symbol count apart from
an absent table. Check every Mach-O command before building rows and retain
only the offsets the rows need.

Make the verifier's readelf output wide, check the emitted format before
parsing Mach-O, and place the sources before the libraries in the link.

* fix(native): share Mach-O segment admission with hardening reads

A segment with a section count its cmdsize cannot hold passed the hardening
reader and could enable restrict_segment. Move the size, section count and
file range checks to a shared admission that readMachoImage and the hardening
reader both use, and pin the ELF load-size case with a regression test.

* fix(hardening): reject Mach-O section payloads past the slice and empty ELF interpreters

Segment admission never checked each section's payload range, so a
file-backed section past the slice still produced rows. Decode sections with
the section header owner and mark the slice malformed when a payload leaves
it; zero-fill and empty sections own no file bytes and are exempt.

admitInterp accepted a NUL first byte in a longer extent, which counted an
empty interpreter as PIE evidence. It now requires a nonempty path.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
Claude-Session: https://claude.ai/code/session_01KuWHGvzJkrhCqjtEHUwqyH

* fix(native): read CFG instrumentation from decoded GuardFlags

Use the IMAGE_GUARD_CF_INSTRUMENTED flag that guardFlagRecord already
decodes instead of masking the raw GuardFlags word a second time.

* fix(native): reject ELF table spans a second PT_LOAD remaps

The hardening reader mapped DT_STRTAB, DT_SYMTAB and hash tables through
the one PT_LOAD containing the table's first address. A second PT_LOAD
starting inside the table could map the rest of it from other file bytes
and the reader still reported parsed import evidence.

Cap each mapping at the next PT_LOAD that starts inside it, reject a
requested range that crosses that boundary, and stop hash reads at the
same limit, matching the conflicting-mapping refusal in readElfSymbols.

* fix(native): dedupe ELF note tables only on shared boundaries

The hardening reader dropped any note table whose bytes another table
already covered. A covering SHT_NOTE can hold a non-GNU note whose
descriptor is itself a complete GNU property note, while PT_NOTE names
that inner note directly. Walking only the outer stream missed the GNU
marker and reported CET disabled.

Drop an alias only when it starts and ends on boundaries of admitted
tables, which are note boundaries of the walked streams. Any other
covered alias leaves the feature rows unknown, as a partial overlap
already does.

* fix(native): admit every Mach-O symbol record after a canary match

The Mach-O stack protector scan returned as soon as it found an
undefined ___stack_chk_fail, so a later undefined symbol whose n_strx
lay outside the string table was never checked. The same damaged table
parsed or failed as malformed depending only on record order.

Keep the match and finish the bounded record walk. Records after the
match are only checked against the string table bounds, so their names
are not read or charged to the scan budget. The ELF reader already
admits its whole symbol table before matching names.

* fix(native): accept ELF load aliases with the same file translation

The hardening reader treated every PT_LOAD that starts inside a table,
or that also contains the table's address, as a conflicting mapping.
A load with the same address-to-file translation names the same file
bytes, so tables it overlaps still have one interpretation, and the
canonical ElfLoadMap already merges such spans.

Treat equivalent loads as one interpretation. A load with a different
translation, or the zero-filled tail of an equivalent load, still ends
the usable range, so a remapped table is still rejected.

* fix(native): keep same-span ELF note tables with different alignments unknown

A section and a program header that share endpoints were treated as one
note stream even when their effective note alignments differed. Walking the
same bytes at 4 and 8 can frame different notes, so dropping the second table
could hide a GNU property word and report CET or BTI as disabled.

Require matching effective alignment at both endpoints, and no alignment
change inside the covered span, before treating a table as an alias.
Otherwise mark the feature rows unknown. The fixture's .note.gnu.property
section now declares the class's note alignment, as toolchains emit it.

* refactor(native): read LC_SYMTAB through the shared fixed-word decoder

Move the Mach-O fixed uint32 command layouts out of MachoCommandNames
into domain/apple/machoLoadCommands so there is one owner of those
offsets. MachoCommandNames and the hardening reader now both decode
through it; the hardening reader keeps its own bounds and import policy.

* fix(native): skip Mach-O common definitions in canary imports

A common definition sets N_UNDF|N_EXT like an import but stores its
allocation size in n_value. An object holding only
`int __stack_chk_fail;` therefore reported stack_protector: enabled.

Require a zero n_value before an undefined external counts as an
import, for both nlist widths.

* refactor(native): read linkedit data commands through the shared fixed-word decoder

readMachoLinkeditDataCommand reproduced the dataoff/datasize offsets that
FIXED_WORD_FIELDS already owns. Take the command and decode through
decodeMachoFixedWordFields, as readMachoSymtabCommand does, keeping the
truncation and endianness behavior.

* fix(native): skip empty SHT_NOTE sections in ELF hardening

A zero-sized SHT_NOTE owns no bytes, so the section directory marks it
not file-backed and the hardening reader rejected the whole image as
malformed, while readElfImage accepted the same bytes. Skip empty note
sections before the file-backing check; they have nothing to walk.

* fix(scripts): run hardening verifier commands through the shared owner

The binary hardening verifier started its probes and compiler drivers with
raw spawnSync, which bypassed the src/process/ supervision that AGENTS.md
requires. Every launch now goes through createVerifierCommands, and the
temporary root is removed only after the owner closes cleanly.

* fix(scripts): clean up hardening verifier commands on Ctrl-C

SIGINT or SIGTERM ended Node before withVerifierCleanup ran, so detached
compiler trees and the temporary root could outlive the verifier. The
verifier now turns those signals into an abort that every owned command
receives, so cleanup closes the owner and removes the root before exit.

* fix(scripts): fail the hardening verifier when a signal lands outside a command

Only the owned commands read the interruption signal, so a SIGINT or
SIGTERM during the final cleanup or between commands was recorded and
then dropped, and the verifier exited 0. After cleanup settles, the
verifier now throws the interruption reason. A failure the operation or
its cleanup already raised still leaves first and is not replaced.

* fix(native): fail Mach-O slices with a malformed encryption command

The hardening reader turned every malformed status from the shared
encryption reader into an unknown `encrypted` row, so a short
LC_ENCRYPTION_INFO_64 or an encrypted range past the slice still left the
slice parsed with a full report.

Only two conflicting encryption commands stay an unknown row now. Any other
encryption defect fails the slice like other structural command failures.

* fix(native): ignore STB_LOCAL undefined ELF symbols as imports

A local undefined __stack_chk_fail or __memcpy_chk is never resolved
against another object, so it does not establish an external import.
Skip STB_LOCAL bindings when reading protector signs, and give the
fixture's positive symbols STB_GLOBAL binding.

---------

Co-authored-by: Matt Van Horn <455140+mvanhorn@users.noreply.github.com>
Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>

---------

Signed-off-by: Rudy Celekli <rudy@gradiahq.com>
Co-authored-by: Kaoru0822 <208281322+kaoru0822-kitauji@users.noreply.github.com>
Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
Co-authored-by: Edgar Arakelyan <edgar.arakelyan@scale.com>
Co-authored-by: ShuaixinHuang <1836656514@qq.com>
Co-authored-by: highmachs <samarjeeth06@gmail.com>
Co-authored-by: hhang <17309584214@163.com>
Co-authored-by: hhang <169027046+xu91102@users.noreply.github.com>
Co-authored-by: Paritosh Lahre <155938586+SandstromPL@users.noreply.github.com>
Co-authored-by: Adolanium <94890352+Adolanium@users.noreply.github.com>
Co-authored-by: 김준호 <101695482+chordpli@users.noreply.github.com>
Co-authored-by: t <t@t>
Co-authored-by: Hasan Zayni <36798269+dark13b@users.noreply.github.com>
Co-authored-by: Salman Almutairi <141588124+salmanalmutairi1@users.noreply.github.com>
Co-authored-by: Lucien <164857476+dakjdakd@users.noreply.github.com>
Co-authored-by: RRFZ <247457381+Plastic-time@users.noreply.github.com>
Co-authored-by: 2SinceJuly <hongjxiao@gmail.com>
Co-authored-by: Wade <160517347+Sriram-PR@users.noreply.github.com>
Co-authored-by: Martin Klein <36695017+flitzrrr@users.noreply.github.com>
Co-authored-by: morluto <76467478+morluto@users.noreply.github.com>
Co-authored-by: Rudy Mizrahi Celekli <47457359+rudycelekli@users.noreply.github.com>
Co-authored-by: xin zhuang <65798732+1052326311@users.noreply.github.com>
Co-authored-by: Beqa <91750923+BeqaKs@users.noreply.github.com>
Co-authored-by: NoThing <sarthakpandey5667@gmail.com>
Co-authored-by: Sarthak Pandey <sarthak@email.com>
Co-authored-by: akushonkamen <74654766+akushonkamen@users.noreply.github.com>
Co-authored-by: akushonkamen <akushonkamen@users.noreply.github.com>
Co-authored-by: amyanger <57688398+amyanger@users.noreply.github.com>
Co-authored-by: Abel Yagubyan <abelyagubyan@berkeley.edu>
Co-authored-by: Abelo9996 <Abelo9996@users.noreply.github.com>
Co-authored-by: Jiabin Yin <54463072+Nolkee@users.noreply.github.com>
Co-authored-by: Cursor Agent <cursoragent@cursor.com>
Co-authored-by: Mohamed Ayoub Eleuch <58662566+AyoubElleuch@users.noreply.github.com>
Co-authored-by: Kaoru0822 <kanadekitauji@proton.me>
Co-authored-by: Matt Van Horn <mvanhorn@users.noreply.github.com>
Co-authored-by: Matt Van Horn <455140+mvanhorn@users.noreply.github.com>
Co-authored-by: gensokyo-dev <gensokyo-dev@users.noreply.github.com>
2026-11-06 02:06:39 +08:00
Saim ShafiqueandSaim Shafique e5f638310c fix(cli): reject project-scoped Amp registration (#7979)
* fix(cli): reject project-scoped Amp registration

Incur's mcp add parses --no-global but its Amp writer always writes the
global settings file, so a project-scoped Amp request exited 0 reporting
success while changing global config. Fail closed in the entrypoint before
Incur dispatches: project-scoped Amp registration now exits 1 with a
diagnostic and leaves global settings untouched. Global Amp registration
is unchanged.

Fixes #7535

* fix(cli): exempt discovery requests from the Amp project-scope guard

Discovery requests are not registrations: mcp add --no-global with a
discovery flag (--help, -h, --llms, --llms-full, --version, --schema) now
passes through to normal handling instead of exiting 1 with the scope
error, matching the discovery set mcp add itself exempts. Real
project-scoped Amp registrations are still rejected before Incur runs.
Also restores the executable bit on scripts/rea.mjs, and adds launcher
dispatch tests proving the guard rejects a real registration before the
CLI runtime loads and passes discovery requests through.

* fix(cli): share the mcp add discovery classification between guard and routing

The Amp project-scope guard kept its own copy of the mcp add discovery
flags, which could drift from the discovery routing in cli.ts.
classifyMcpAddDiscovery in cliBuiltinArguments.ts is now the single
owner: the guard and the cli.ts mcp add special-casing both consume it,
with bypass/version/schema precedence matching the routing. No behavior
change; covered by classification unit tests and the existing mcp add
discovery serve test.

* fix(cli): emit structured output for Amp project-scope refusal

The Amp project-scope guard wrote a plain message to stderr and left
stdout empty when the caller asked for a structured document (json,
jsonl, yaml), contradicting the failure framing documented for the
output argument. Structured formats now render the refusal through the
same pre-execution error renderer the neighboring output-argument
branch uses, with code AMP_PROJECT_SCOPE_UNSUPPORTED on stdout; every
other format keeps the byte-identical plain stderr message. The guard
still exits 1 before dist/cli-runtime/cli.js is imported.

Co-authored-by: Saim Shafique <128062316+sx4im@users.noreply.github.com>

* test(cli): cover Amp project-scope guard through the launcher

The guard tests only called isProjectScopedAmpRegistration, so they
still passed with its call in scripts/rea.mjs removed. Add a launcher
test with an isolated home and working directory that checks the exit
code, the diagnostic, the unchanged global settings, and the absence
of project files for both explicit Amp and default-agent requests.

Co-authored-by: Saim Shafique <128062316+sx4im@users.noreply.github.com>

* test(cli): assert Amp project-scope refusal by error code

The --no-global refusal tests locked the full English sentence. Structured output now asserts AMP_PROJECT_SCOPE_UNSUPPORTED and a message field.

* fix(cli): share normalized mcp add agent selection with the scope guard

The project-scope guard scanned raw arguments and only recognized the spaced --agent form, while dispatch expanded --agent= equals forms first: --agent=claude-code was wrongly refused as default Amp, and --agent claude-code --agent=amp slipped Amp past --no-global. The equals expansion and agent scan now live once in cliBuiltinArguments.ts and both callers consume them, so guard and dispatch read the same selection.
2026-11-06 02:01:30 +08:00
Edgar ArakelyanandClaude Opus 5.5 0ac6be1a3d ci(environment): pin the real agentenv lane to agentenv-framework 0.9.1431 (#8865)
* ci(environment): pin the real agentenv lane to agentenv-framework 0.9.1431

The real-agentenv lane, its identity check and the docs pinned
agentenv-framework 0.9.1334, 97 releases behind the current 0.9.1431.
Recorded verification notes keep the versions they ran with; the website
catalogs change only the placeholder comment that shows the version.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* docs(environment): describe 0.9.1431's pulled infra images; keep the site on the release

0.9.1431 pulls its gateway and service-db images from ghcr.io by the
digests its release records and builds one only when that pull fails,
so the lane docs, the export guide and the verifier's comments now say
so, and the mirror step fetches only the bases those builds name. The
public site describes the released package, which still runs 0.9.1334,
so its guide and evidence page keep that version until a release ships
the new pin.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-06 01:53:53 +08:00
dd31958743 fix(discovery): advertise attached IDA navigation effects (#7017)
* fix(discovery): advertise attached IDA navigation effects

The canonical tool audit now includes the UI and network effects of the attached IDA legacy profile for the four navigation operations. Session inventory still starts from the provider-neutral evidence base and composes the selected provider descriptors, so headless and native sessions do not inherit attached UI state.

Adds SDK/session boundary coverage for all four operations and preserves attached, headless, and native distinctions.

* fix(discovery): cover IDA provider effects across tools and workflows

* test(discovery): isolate IDA metadata from host tool probes

* test(discovery): compare live identity with session effect bases

* fix(discovery): audit complete IDA provider effect union

* fix(discovery): exclude unreachable provider workflow effects

* fix(discovery): propagate IDA effects through composed tools

* fix(artifacts): deduplicate keyed archive path diagnostics

* test(artifacts): use real bundle in provider binding fixture

* test(mcp): align overview inventory fixtures with row contracts

* fix(javascript): align Electron path and owner identities

Refresh archive close and function CLI fixtures for current admission and Result contracts.

* test: align boundary fixtures with runtime prerequisites

* test(javascript): preserve unknown Electron IPC ownership in fixture

* fix: audit IDA network effects during lifecycle cleanup

* test: align close lifecycle hint with network audit

* style(website): format merged Wrangler watch paths

* fix(discovery): retain retry and cleanup effects

* style(website): drop unrelated Wrangler formatting

The watch_dir reflow is whitespace only. The IDA navigation-effect fix stays.

---------

Co-authored-by: dhruvac29 <dhruvac29@users.noreply.github.com>
Co-authored-by: Cursor Agent <cursoragent@cursor.com>
Co-authored-by: morluto <76467478+morluto@users.noreply.github.com>
2026-11-06 01:47:56 +08:00
f76be69428 fix(cli): reject non-decimal byte-entropy window options (#8919)
* fix(cli): reject non-decimal byte-entropy window options

* fix(cli): admit artifact numeric options as decimals

Keyed-archive offset and limit, asset-catalog paging, and interface-builder budgets use the same decimal token check as byte-entropy windows. Defaulted fields stay numbers.

---------

Co-authored-by: Cursor Agent <cursoragent@cursor.com>
Co-authored-by: morluto <76467478+morluto@users.noreply.github.com>
2026-11-06 01:46:53 +08:00
c1ee8289c9 fix(signals): name the limiter as a possible cause of a failed sigrok version probe (#6395)
* fix(signals): report a failed sigrok version probe as a configuration error

* fix(signals): attribute a failed version probe to the limited probe

* fix(signals): name the limiter as a possible cause of a failed version probe

The version probe runs under the resource limiter, so a nonzero status
can come from prlimit as well as sigrok-cli. Say so in the configuration
refusal instead of blaming sigrok-cli alone, and cover a limiter that
refuses to start the tool for both decode and discovery.

* test(signals): assert limiter probe failures by typed fields

The limiter-refused recording test locked English probe wording. Assert the capability-unavailable code, provider, operation, and captured limiter output instead.

* fix(signals): record an unattributed version-probe status owner

A nonzero resource-limited version probe now reports version_probe_status_owner limiter-or-tool. The limiter-refusal test requires that field, so the old sigrok-cli-only failure no longer passes.

---------

Co-authored-by: Abelo9996 <Abelo9996@users.noreply.github.com>
Co-authored-by: Cursor Agent <cursoragent@cursor.com>
Co-authored-by: morluto <76467478+morluto@users.noreply.github.com>
2026-11-06 01:46:40 +08:00
560674e2de feat(native): report binary hardening for ELF, PE and Mach-O (#8524)
* feat(native): report binary hardening for ELF, PE and Mach-O

Documents inspect_binary_hardening and its CLI equivalent, including
per-property states, supporting evidence, read budgets, and one report
per Mach-O slice. Explains that missing protection imports remain
unknown, signature presence does not establish validity, and hardened
runtime requires inspect_signature. Adds hardening links throughout the
documentation. The supplied diff also removes the advanced CodeQL
workflow and configuration, along with snapshot-binding mismatch
guidance.

* fix(native): validate declared payloads and dynamic tables before hardening rows

Run the shared range checks for ELF, read imports from the dynamic tables
rather than section metadata, and keep an unresolved symbol count apart from
an absent table. Check every Mach-O command before building rows and retain
only the offsets the rows need.

Make the verifier's readelf output wide, check the emitted format before
parsing Mach-O, and place the sources before the libraries in the link.

* fix(native): share Mach-O segment admission with hardening reads

A segment with a section count its cmdsize cannot hold passed the hardening
reader and could enable restrict_segment. Move the size, section count and
file range checks to a shared admission that readMachoImage and the hardening
reader both use, and pin the ELF load-size case with a regression test.

* fix(hardening): reject Mach-O section payloads past the slice and empty ELF interpreters

Segment admission never checked each section's payload range, so a
file-backed section past the slice still produced rows. Decode sections with
the section header owner and mark the slice malformed when a payload leaves
it; zero-fill and empty sections own no file bytes and are exempt.

admitInterp accepted a NUL first byte in a longer extent, which counted an
empty interpreter as PIE evidence. It now requires a nonempty path.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
Claude-Session: https://claude.ai/code/session_01KuWHGvzJkrhCqjtEHUwqyH

* fix(native): read CFG instrumentation from decoded GuardFlags

Use the IMAGE_GUARD_CF_INSTRUMENTED flag that guardFlagRecord already
decodes instead of masking the raw GuardFlags word a second time.

* fix(native): reject ELF table spans a second PT_LOAD remaps

The hardening reader mapped DT_STRTAB, DT_SYMTAB and hash tables through
the one PT_LOAD containing the table's first address. A second PT_LOAD
starting inside the table could map the rest of it from other file bytes
and the reader still reported parsed import evidence.

Cap each mapping at the next PT_LOAD that starts inside it, reject a
requested range that crosses that boundary, and stop hash reads at the
same limit, matching the conflicting-mapping refusal in readElfSymbols.

* fix(native): dedupe ELF note tables only on shared boundaries

The hardening reader dropped any note table whose bytes another table
already covered. A covering SHT_NOTE can hold a non-GNU note whose
descriptor is itself a complete GNU property note, while PT_NOTE names
that inner note directly. Walking only the outer stream missed the GNU
marker and reported CET disabled.

Drop an alias only when it starts and ends on boundaries of admitted
tables, which are note boundaries of the walked streams. Any other
covered alias leaves the feature rows unknown, as a partial overlap
already does.

* fix(native): admit every Mach-O symbol record after a canary match

The Mach-O stack protector scan returned as soon as it found an
undefined ___stack_chk_fail, so a later undefined symbol whose n_strx
lay outside the string table was never checked. The same damaged table
parsed or failed as malformed depending only on record order.

Keep the match and finish the bounded record walk. Records after the
match are only checked against the string table bounds, so their names
are not read or charged to the scan budget. The ELF reader already
admits its whole symbol table before matching names.

* fix(native): accept ELF load aliases with the same file translation

The hardening reader treated every PT_LOAD that starts inside a table,
or that also contains the table's address, as a conflicting mapping.
A load with the same address-to-file translation names the same file
bytes, so tables it overlaps still have one interpretation, and the
canonical ElfLoadMap already merges such spans.

Treat equivalent loads as one interpretation. A load with a different
translation, or the zero-filled tail of an equivalent load, still ends
the usable range, so a remapped table is still rejected.

* fix(native): keep same-span ELF note tables with different alignments unknown

A section and a program header that share endpoints were treated as one
note stream even when their effective note alignments differed. Walking the
same bytes at 4 and 8 can frame different notes, so dropping the second table
could hide a GNU property word and report CET or BTI as disabled.

Require matching effective alignment at both endpoints, and no alignment
change inside the covered span, before treating a table as an alias.
Otherwise mark the feature rows unknown. The fixture's .note.gnu.property
section now declares the class's note alignment, as toolchains emit it.

* refactor(native): read LC_SYMTAB through the shared fixed-word decoder

Move the Mach-O fixed uint32 command layouts out of MachoCommandNames
into domain/apple/machoLoadCommands so there is one owner of those
offsets. MachoCommandNames and the hardening reader now both decode
through it; the hardening reader keeps its own bounds and import policy.

* fix(native): skip Mach-O common definitions in canary imports

A common definition sets N_UNDF|N_EXT like an import but stores its
allocation size in n_value. An object holding only
`int __stack_chk_fail;` therefore reported stack_protector: enabled.

Require a zero n_value before an undefined external counts as an
import, for both nlist widths.

* refactor(native): read linkedit data commands through the shared fixed-word decoder

readMachoLinkeditDataCommand reproduced the dataoff/datasize offsets that
FIXED_WORD_FIELDS already owns. Take the command and decode through
decodeMachoFixedWordFields, as readMachoSymtabCommand does, keeping the
truncation and endianness behavior.

* fix(native): skip empty SHT_NOTE sections in ELF hardening

A zero-sized SHT_NOTE owns no bytes, so the section directory marks it
not file-backed and the hardening reader rejected the whole image as
malformed, while readElfImage accepted the same bytes. Skip empty note
sections before the file-backing check; they have nothing to walk.

* fix(scripts): run hardening verifier commands through the shared owner

The binary hardening verifier started its probes and compiler drivers with
raw spawnSync, which bypassed the src/process/ supervision that AGENTS.md
requires. Every launch now goes through createVerifierCommands, and the
temporary root is removed only after the owner closes cleanly.

* fix(scripts): clean up hardening verifier commands on Ctrl-C

SIGINT or SIGTERM ended Node before withVerifierCleanup ran, so detached
compiler trees and the temporary root could outlive the verifier. The
verifier now turns those signals into an abort that every owned command
receives, so cleanup closes the owner and removes the root before exit.

* fix(scripts): fail the hardening verifier when a signal lands outside a command

Only the owned commands read the interruption signal, so a SIGINT or
SIGTERM during the final cleanup or between commands was recorded and
then dropped, and the verifier exited 0. After cleanup settles, the
verifier now throws the interruption reason. A failure the operation or
its cleanup already raised still leaves first and is not replaced.

* fix(native): fail Mach-O slices with a malformed encryption command

The hardening reader turned every malformed status from the shared
encryption reader into an unknown `encrypted` row, so a short
LC_ENCRYPTION_INFO_64 or an encrypted range past the slice still left the
slice parsed with a full report.

Only two conflicting encryption commands stay an unknown row now. Any other
encryption defect fails the slice like other structural command failures.

* fix(native): ignore STB_LOCAL undefined ELF symbols as imports

A local undefined __stack_chk_fail or __memcpy_chk is never resolved
against another object, so it does not establish an external import.
Skip STB_LOCAL bindings when reading protector signs, and give the
fixture's positive symbols STB_GLOBAL binding.

---------

Co-authored-by: Matt Van Horn <455140+mvanhorn@users.noreply.github.com>
Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-06 01:07:00 +08:00
morluto ec3410998b fix(ci): align tests with current evidence contracts 2026-11-06 00:31:09 +08:00
Kaoru0822andClaude Opus 5.5 fe677f6cf9 fix(rizin): keep debug targets off the debugger command stream (#8647)
* fix(rizin): keep debug targets off the debugger command stream

A Rizin debug target inherited Rizin's stdin, which is REA's command
stream. Once resumed, a target that reads stdin consumed REA's commands,
so close returned cleanup_incomplete and the one-shot CLI hung.

Route the target's stdin to the caller-selected TTY alongside stdout and
stderr. Before detaching, refuse a target whose stdin is still the command
stream, so a Rizin or backend that ignores the key gets a specific,
retained failure instead of a resumed target and a timeout.

Fixes #8642

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* test(rizin): keep the stdin test launcher's descriptors under dash

The launcher gated its target with `cat "$2" >/dev/null`. dash applies a
simple command's redirection to the shell itself until the command returns,
so on Ubuntu the waiting shell's fd 1 was /dev/null, and that shell is the
target REA reads in /proc. All 8 Linux-gated tests then failed the existing
output-descriptor check. macOS /bin/sh is bash, which redirects only in the
forked child, so this did not show locally.

Gate without any redirection. Production code is unchanged.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* test(rizin): reject unmodeled commands and own cleanup at acquisition

Address review of the stdin regression tests.

The launcher accepted any unknown line, so the marker that followed could
complete it, and assertions only checked that commands were present. An
added `dc` or a repeated `olj` still passed. It now records an unknown line
and exits, and the tests pin the exact command sequence.

Cleanup hung off module state assigned after setup finished, so a failed
setup left its directory and terminal child behind. Each resource now
registers its own finish hook when acquired, using createTestTempDirectory.

Success checks throw the typed error instead of asserting `.ok`, and the
refusal probe no longer sits inside a loop and conditional.

Production code is unchanged.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-05 18:38:12 +08:00
Mohamed Ayoub Eleuch 845eb54d2b fix(prompts): include existing static artifact investigation routes (#8972)
* fix(prompts): include existing static artifact investigation routes

* fix(prompts): preserve workflows in existing family scopes

* fix(prompts): require readers for Apple resource routes
2026-11-05 18:37:20 +08:00
morlutoandCursor Agent 56be61191e fix(mcp): report target after failed open (#8613)
* fix(mcp): report target after failed open

* test(session): cover failed open receipt ownership

* test(session): verify restored target receipt

* test(mcp): retain target on snapshot mismatch

* test(mcp): retain oversized open failure receipts

* test(cli): avoid continuing session receipt in one-shot errors

* fix(mcp): report provider after failed switch

* test(ghidra): verify failed open preserves annotations

* test(mcp): join queued receipt request before cleanup

* test(session): assert open failure receipts in lifecycle suites

* test(session): keep open-failure receipt checks within function limits

Move the provider-collision case and snapshot fixture setup out of the
functions that grew when both failure receipts were asserted.

---------

Co-authored-by: Cursor Agent <cursoragent@cursor.com>
2026-11-05 18:35:22 +08:00
Beqa 3395c9e6b3 fix(ida): admit Docker host-gateway names as local MCP hosts (#8932)
Containerized REA reaches an IDA MCP server on the container host through
host.docker.internal (Docker, Podman compatibility) or
host.containers.internal (Podman). The HTTP registration refinement only
admitted localhost, 127.0.0.1 and [::1], so doctor reported the valid
gateway registration as invalid_configuration.

Admit both gateway names in the registration's local-host set. The
refinement still requires http or https, no URL credentials, and refuses
every other host.

Fixes #8925
2026-11-05 18:34:28 +08:00
Jiabin Yin da79ea0baa fix(il2cpp): reject module image references outside retained inventory (#8956) 2026-11-05 18:33:36 +08:00
Beqa 4362a0848e fix(javascript): transient Windows private-runtime source-transfer (#8769)
* fix(javascript): transient Windows private-runtime source-transfer

Parent source-transfer into the Windows private runtime root failed with
EPERM on path-based exclusive create. Write through a native transient
private-runtime path that closes the handle after flush so per-job rm
still works, and yield around the sync write so abort deadlines can fire.

* fix(javascript): yield timer phase before Windows source-transfer write
2026-11-05 18:32:43 +08:00
highmachs 7b6fc6f13d fix(javascript): resolve electron findings through aliases of interop results (#8914)
* fix(javascript): resolve electron findings through aliases of interop results

* fix(javascript): resolve interop aliases iteratively and check target mutations

* fix(javascript): retain possible writes through uncertain aliases and guard positive reads

* perf(javascript): cache alias change status across semantic interop lookups
2026-11-05 18:31:52 +08:00
highmachs 281dbc8514 fix(apple): preserve exact integer precision with post-table plist objects (#8910) 2026-11-05 18:30:59 +08:00
027c768f07 fix(captures): classify unresolvable capture paths as capture_path input (#7814)
* fix(captures): classify unresolvable capture paths as capture_path input

Fixes #7636

* test(captures): cover unresolvable descriptor paths

---------

Co-authored-by: Abelo9996 <Abelo9996@users.noreply.github.com>
Co-authored-by: morluto <76467478+morluto@users.noreply.github.com>
2026-11-05 18:30:07 +08:00
amyanger a9febababc fix(browser): report an out-of-range generated position as a selection fault (#7133)
trace_web_source_location reported a well-formed generated_position past
the end of the selected script as invalid_format on generated_position,
with no bounds, so callers were told their input was malformed and not
which coordinate to change. Report out_of_range on the line or column
that is past the end, with its valid bounds, as export_web_scripts and
inspect_web_network_capture now do for their selections.

The position scan now returns the bound it ran past, so the offset and
the reported limit come from one pass and cannot disagree on line
terminators.

Fixes #7132
2026-11-05 18:29:14 +08:00
akushonkamenandakushonkamen 0714eba505 fix(gdb): keep inferior-tty verification for read-only queries (#5539)
* fix(gdb): keep TTY verification across read-only inferior-tty inspection

The console command path cleared `inferiorTtyVerified` before dispatching
any command whose text merely mentioned `inferior-tty`, so the read-only
`show inferior-tty` query permanently revoked a persistent session's
verified output sink; no in-session path ever restored the flag, and a
later close of a live session failed detach verification with
capability_unavailable.

Exempt the exact read-only query forms (`show inferior-tty` and the MI
`-inferior-tty-show`) from the output-mutation predicate; every other
command mentioning the TTY setting keeps revoking, so mutating commands
still fail closed and detach keeps re-reading the live TTY before
detaching. Cover the query forms, composite commands, and the
inspect-then-close detach path with regression tests.

Fixes #5099

* test(gdb): classify show inferior-tty in the one-shot table and rename the TTY classification table

- Add a 'show inferior-tty' row to the 'classifies one-shot GDB
  commands' table: the read-only query no longer invalidates the detach
  proof, a user-visible one-shot behavior change.
- Rename the 'classifies read-only inferior TTY queries as non-mutating'
  table to 'classifies inferior TTY commands' since two of its rows are
  mutation cases.
- Assert via the existing recorded-commands array that the inspected
  'show inferior-tty' text is actually dispatched, and add an
  execute-path assertion that the MI '-inferior-tty-show' form leaves
  the verified-sink flag intact (defensive exemption: REA's own MI calls
  do not route through this gate).

---------

Co-authored-by: akushonkamen <akushonkamen@users.noreply.github.com>
2026-11-05 18:28:22 +08:00
NoThingandSarthak Pandey fbfb1b768c fix(cli): normalize exit status on worker cleanup failure (#8049) (#8050)
* fix(cli): normalize exit status on worker cleanup failure (#8049)

* test(cli): verify SDK output status and finalization rejection on exit

* ci: retrigger checks

---------

Co-authored-by: Sarthak Pandey <sarthak@email.com>
2026-11-05 18:27:29 +08:00
Beqa 08a923f722 fix(ghidra): report restricted-host temp write denial on Windows (#8889)
* fix(ghidra): report restricted-host temp write denial on Windows

Add a Windows doctor check that creates and deletes a file under os.tmpdir(), and classify a denied java_home.save in Ghidra startup output with its path, Win32 error 5, and TMP/TEMP remediation. The probe covers REA's own process only; a host that restricts only child processes is reported from the child's output at startup.

Fixes #7075

* fix(ghidra): probe the session root and retain failed probe cleanup

The Windows doctor temp_directory probe now writes under ghidraSessionRoot(), the same root Ghidra session runtimes use, instead of os.tmpdir(), which can differ when the inherited temp path has a dot-prefixed element. A probe file whose removal fails is retained on the doctor resource owner so doctor shutdown retries the removal; the result still reports its path.
2026-11-05 17:52:25 +08:00
xin zhuangandKaoru0822 c7fce66035 test(cli): cover Frida argument admission and spawn ordering (#3356)
* fix(cli): reject spawn arguments in Frida attach mode

* test(cli): remove redundant Frida recorder assignments

---------

Co-authored-by: Kaoru0822 <208281322+kaoru0822-kitauji@users.noreply.github.com>
2026-11-05 17:38:14 +08:00
morluto 0aaa582977 test(ghidra): check retained historical snapshot evidence (#8381)
* test(ghidra): check retained historical snapshot evidence

* test(ghidra): select historical observations by address
2026-11-05 17:37:29 +08:00
morluto 15107aa81b test(ghidra): check structured snapshot profile mismatch (#8536) 2026-11-05 17:36:46 +08:00
morluto 2be2d006b8 test(ghidra): check regex recovery at its owning boundary (#8578) 2026-11-05 17:36:02 +08:00
morluto ab9f7235a3 fix(evidence): clarify unsupported view recovery (#8412)
* fix(evidence): clarify unsupported view recovery

* fix(evidence): explain sensitive capture view refusal
2026-11-05 17:35:19 +08:00
morluto b8963c1808 fix(mcp): clarify retained dossier handoff in crash prompt (#8437) 2026-11-05 17:34:33 +08:00
morluto 9eff4f7265 fix(verification): use inspected Ghidra JDK (#8440) 2026-11-05 17:33:48 +08:00
morluto 6f3f06a891 fix(evidence): traverse large source link sets safely (#8457) 2026-11-05 17:33:04 +08:00
Rudy Mizrahi Celekli 7504f2ddfc fix(native): reject nonzero reserved ELF dynamic symbols (#7528)
fix(native): validate the reserved ELF dynamic symbol

Signed-off-by: Rudy Celekli <rudy@gradiahq.com>
2026-11-05 17:32:20 +08:00
Rudy Mizrahi Celekli 21ad5b1f67 fix(pe): classify valid DOS targets as unsupported (#7530)
fix(pe): classify confirmed DOS targets as unsupported

Signed-off-by: Rudy Celekli <rudy@gradiahq.com>
2026-11-05 17:31:35 +08:00
ShuaixinHuang 6fceda83d5 fix(devicetree): reject duplicate node paths in Evidence (#8970) 2026-11-05 17:30:50 +08:00
ShuaixinHuang 1dc83b160d fix(cli): align ADB directory and package query schemas (#8974)
* fix(cli): align ADB directory and package query schemas

* fix(cli): preserve ADB selector correction details
2026-11-05 17:30:06 +08:00
morluto 65986d0a0f docs(tool-design): audit agent workflow guidance (#8439)
* docs(tool-design): audit agent workflow guidance

* docs(tool-design): check deployed guidance versions
2026-11-05 17:28:48 +08:00
morluto 146064c2e9 fix(enhanced): restore batch input record limit 2026-11-05 17:20:05 +08:00
ShuaixinHuang 3484432fb1 fix(setup): flag unresolved migrated Claude Desktop storage (#8971)
* fix(setup): flag unresolved migrated Claude Desktop storage

* fix(setup): preserve Claude MSIX process view when config is unresolved
2026-11-05 17:14:19 +08:00