Files
rea/docs/native-investigation.md
+27 fb453f2930 fix(mcp): support retained pseudocode summaries and paging (#5046)
* refactor(mcp): share official tool evidence registration

Route official tools through registerEvidenceTools and remove the duplicate
execution, progress, and Evidence delivery pipeline.

Preserve relationship coverage in the shared path and reuse the existing
source Evidence recording helper.

Validation: typecheck and 29 focused MCP tests passed.
Real native providers were not exercised.

* fix(mcp): support retained pseudocode summaries and paging

Allow procedure_pseudo_code to return an opt-in summary linked to its
retained complete Evidence. Extend inspect_analysis_view to page the
original pseudocode without repeating provider analysis.

Preserve default complete output and exclude delivery detail from
provider parameters and source Evidence identity.

Add regression coverage for large results, Unicode, null and empty
output, missing retention, transport-overflow recovery, and CLI paging.

Validation: 178 focused tests, build, check, docs:check, and test discovery
passed. Real stdio simulation reconstructed 98,000 code units exactly.
Real Ghidra, iTunes, and Claude Code verification remains unavailable.

Fixes #5032

* test(mcp): scope pseudocode contract lookup to official tools

* feat(desktop): capture and export apps installed from a downloaded .deb (#8954)

* feat(desktop): capture a Linux desktop application in use

Add `capture-desktop-application`, a CLI-only, Linux and X11 capture that
launches an installed desktop application, watches it while it is used and
writes capture Evidence plus SHA-256 addressed content:

- inventory: desktop entry, launch command, executable, package and its
  apt sources (or snap, flatpak, AppImage), Electron markers and candidate
  state directories;
- session: the launched process tree, client windows from xprop with the
  first application window time and a window match, and files held open;
- state: a stat walk of the home directory before launch, at checkpoints
  read from stdin, at stop and after exit, with created, modified, deleted
  and retyped paths and the content of changed files and state directories.

It refuses non-Linux hosts, missing DISPLAY or xprop, a non-empty output
folder and an application whose window is already open, and signals only
processes it started.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): own launched processes, confirm walk coverage and keep cancelled captures

- Launch through the owned provider path with a run token; release with
  SIGTERM, then the token-verified group cleanup, after every session.
  Processes without the token are never signalled; each records whether it
  carries it, and the session records whether cleanup was verified.
- Report creations and deletions only where a walk listed the nearest
  existing directory; count the rest as unconfirmed.
- Retain a file only when it is still the walked version, through owned
  no-follow reads; charge the budget only for new content; create files
  exclusively in a private output folder owned by the caller.
- Walk content roots outside the home directory, compare paths in their
  physical spelling, and run executables from the caller's directory.
- Refuse when the window list cannot be read, re-evaluate window ownership
  each sample, handle one queued request per sample with a bounded stdin
  queue, and write the capture with end reason `cancelled` on interruption.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): keep owned cleanup failures and fresh digests

- Allow a capture cancelled before any requested checkpoint to hold only the
  baseline.
- Retry an incomplete stop once; if cleanup is still unverified, write the
  capture and fail with the run token and process group as cleanup
  resources.
- Classify path changes after a walk (ENOTDIR and other selected-file
  errors) as changed_since_walk instead of failing the capture.
- Treat a non-directory ancestor as proof that nothing existed beneath it.
- Report a before digest only for the file version it was read from.
- Derive stderr_truncated from stderr's own byte counts.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* wip(desktop): state view over a capture folder

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): keep failed file-handle closes owned for retry

Content reads pass retainFailedClose, so a handle whose close fails stays
owned by the content store; the capture retries those closes after it is
written and fails with the output folder as the cleanup resource if one
still cannot be closed.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* feat(desktop): read a captured application's state

Add inspect-desktop-application-state, a CLI command that reads a capture
folder into the application's state: every retained or changed file with
its role and reasons, a typed JSON view of each version (SQLite through the
shared worker, dconf through a private dconf dump, JSON, XML, key files,
text) and the kinds of change between versions (lines, values, keys, rows).

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): report process and handle cleanup failures together

When both the launched processes and a retained file's handle remain
unresolved after the capture is written, one cleanup error now lists both
reasons and both resource sets.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* feat(desktop): export a captured application as an agentenv computer app

Add export-desktop-application, which writes an agentenv bundle with one
computer_app environment from a capture folder and its state view: the
apt package, a boot launch matched on the captured window class with a
window ready check, owned paths from the state roles, a seed of the
baseline files, data hooks that call agentenv's add/get/reset helpers
with a typed JSON view on get, a skill, a README and a deploy smoke task.
The desktop CLI commands now load their services lazily.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): keep state views faithful to the capture

- Read key files, XML attributes, dconf groups and SQLite tables into
  dictionaries without inherited properties, so captured keys such as
  __proto__ stay data.
- Version databases with their write-ahead log as of each checkpoint, and
  stage only digest-verified bytes for the SQLite and dconf readers.
- Detect the format per version, report format changes, keep JSON null and
  empty containers as values, keep XML text and preserved whitespace, and
  mark truncated views (including XML depth) and comparisons of them.
- Number versions and changes by checkpoint index, decide baseline
  presence from the captured type, and keep tagged SQLite integers, text
  bytes and blobs distinct.
- Carry the capture's limitations and omitted content forward, match state
  directories by their home path, index changes once per capture, keep
  failed handle closes owned, and finish the CLI through the shared owner.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): keep coverage, logs and handles honest in the state view

- Read coverage flags only from formats whose readers write them, so JSON
  fields named truncated stay data.
- Fail a SQLite version whose write-ahead log existed but was not retained
  or does not match its digest, instead of reading the database alone.
- Close retained content on every exit, including cancellation, and report
  a close that still fails together with the primary failure.
- Finish the CLI with the canonical operation name.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): export only what the computer can install and seed

- Refuse packages not from the Ubuntu 24.04 archive, since the computer
  installs by name from that archive.
- Start the launch command in the captured working directory.
- Respell the home path only in files the state view read as text.
- Report files that were not retained instead of dropping them silently.
- Load captured dconf keys for apps that own no files.
- Keep home-level files as owned paths; rename reserved Python class names.
- Mark truncated SQLite and text views in the class's get view, and read
  file types the way the state view does.
- Release the output tree through a resource scope, and read seeds through
  an owner closed on every exit.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): keep staged folders owned, symlinked state roots and XML values

- Stage database bytes in a private runtime root released through a
  resource scope, so a failed removal keeps its owner and is reported with
  the read's outcome.
- Report cleanup facts and owners from desktop failures instead of
  wrapping them as a plain adapter error.
- Record the state directories as walked, in their physical spelling, and
  match roles against both spellings, so files in a symlinked state
  directory are not mistaken for selected documents.
- Keep whitespace-only XML leaf values; drop only formatting between
  elements.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): read XML in the exported app the way the state view does

Keep whitespace-only leaf values and xml:space="preserve" text in the
generated get view; drop only formatting between elements.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): release retained handles with their owners, read older captures

- Release retained-content handles whose close failed through a resource
  scope on every exit; a release that fails again reports the exact handle
  owners. A read that finished keeps its bytes when only its close failed.
- Accept captures written before state directories were recorded, and say
  in the state view's limitations that symlinked state directories may be
  misclassed for them.
- Compute each XML element's whitespace context once instead of scanning
  siblings for every text run.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): boot without the working folder, bound XML, accept mirrors

- Try the captured working directory only when an argument is relative,
  and start the app even when that folder is missing.
- Cut the generated XML view at REA's node and depth limits, and keep one
  unreadable file from failing data/get.
- Accept Ubuntu 24.04 mirrors, not only the canonical hosts; PPAs and
  other repositories are still refused.
- Read seeds through the retained-content owner's new signature.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): state view review round

- Stage a retained -journal beside its database so the SQLite worker
  accepts an inactive journal and refuses a hot one; a -wal or -journal
  that existed but was not retained (including one omitted at the
  baseline) makes the version unreadable.
- Keep tables that read when another fails, and let cancellation and
  unfinished cleanup propagate instead of becoming view errors.
- Read text as a key file only when every line parses as one.
- Rank a file named in a window title or selected by the caller as a
  document even when the application holds it open; match titles on
  file-name boundaries; leave the display name out of dconf matching.
- Bound JSON and key file views (4 MiB, 500 levels, exact numbers) and
  report too-large, missing and altered retained content separately.
- Add no version or change while a database stays absent.
- Read staged databases in place instead of copying them again.
- Give Evidence the same limitations as the result.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): export review round

- Load captured dconf keys without D-Bus: install dconf-cli, compile the
  existing and captured key files into the user database, and warn on
  failure instead of stopping the server.
- Start relative-argument launches in the captured working directory,
  the home included, since the framework launches from the app folder;
  respell the home itself and option values under it.
- Read views in a thread, skip files over 64 MiB, align the generated
  readers with the state view's, and close SQLite connections.
- Never own the home or a shared base folder; map a symlinked state
  directory's files back to their home spelling.
- Report omitted files and unretained opened folders.
- Name the module so it cannot shadow another, and keep the class off
  the module's own names; derive names the bundle check accepts.
- Write seeds as they are read, and remove an unpublished bundle on
  failure.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): capture review round

- Ask the launch process group and token carriers to exit before
  killing them, on errors too; report incomplete cleanup with its facts.
- Count descendants of the launch as started by the capture even when
  their environment cannot be read; treat a reused pid as a new process.
- Follow symlinked desktop entries; name a flatpak's state after its
  application id; match flatpak windows by name only.
- Stop on end of input; refuse empty, duplicate and reserved checkpoint
  names; require whitespace after the checkpoint keyword.
- Stay on each walk root's device, and never walk or retain `/` or a
  directory containing the home; say so in the limitations.
- Refuse a window manager that does not publish _NET_CLIENT_LIST.
- Remove retained content when a capture fails before it is written.
- Skip reading a file larger than the remaining content budget.
- Record apt's archive origin for each package source.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): read an unset client list as no windows when supported

xfwm4 leaves _NET_CLIENT_LIST unset while it manages no windows, so the
capture refused an ordinary desktop with nothing open. Read
_NET_SUPPORTED with the list: an unset list means no windows when the
window manager supports it, and the capture is refused only when it
does not. `xprop`'s "no such atom" output now reads as unset too.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): accept packages by apt's archive origin

Accept a package source when apt reports its origin as Ubuntu for a
noble suite, so mirrors count and PPAs or other repositories that merely
have "ubuntu" in their URL do not. Captures made before origins were
recorded fall back to Canonical's own archive hosts. Seed reads report
why retained content could not be used.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* feat(desktop): capture and export apps from vendor apt repositories

A closed-source app installed from its vendor's apt repository, such as
Typora, can now be captured and exported as a computer app.

- The capture records each non-Ubuntu repository listing the installed
  version (uri, suite, components from apt's sources files, one-line or
  deb822) and the key that signs it: the signed-by key, or the trusted
  key that gpgv shows verifies the repository's signed index. The key
  is retained with the capture.
- The capture records the packages owning the libraries the executable
  loads (DT_NEEDED with RUNPATH and the linker cache, through REA's ELF
  readers), since a vendor package may not depend on them.
- The export declares a verified vendor repository as an AptSource with
  its key, installs a vendor package's library packages, and adds
  --no-sandbox to an Electron app's launch, since a container denies
  Chromium's sandbox.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): report a locked database at once in data/get

A database the running app holds locked made each data/get wait sqlite's
five-second busy timeout before reporting it. Record the Typora run in an
agentenv computer in the verification.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* perf(desktop): detect key files without splitting the whole text

Read lines one at a time and stop at the first that a key file view
would drop, instead of splitting a file of up to 64 MiB into arrays
before its format is known.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): keep symlinked homes and state folders under the home in exports

- Respell a path under its state folder's logical spelling only when that
  spelling is under the captured home, so a symlinked HOME keeps its
  files; pair walked and logical state folders only when the capture
  lists the same number, and match the innermost folder first.
- When two files map to one home path, keep the one present before the
  capture and name the other in the limitations.
- Read key files in the generated data/get with the state view's rule,
  checked against it by running the helper under python3.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): end captures on zombies and keep cleanup owners

- A zombie or dead process no longer keeps the session open.
- Remove only the partial capture file this run created.
- Keep the exact owners of handles and processes whose cleanup failed on
  the returned error, so a retry can release them; test the published
  capture's cleanup-failure branch with mixed outcomes and retries.
- Release the application once even when the exit checkpoint fails.
- A cancellation before the capture is written removes what it retained.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): vendor package review round

- Match apt sources through `apt-get indextargets`, which covers flat `./`
  and `/` suites and gives each release file and sources entry.
- Accept a key whose signature verifies even when the release carries
  another signature without a key here; keep only the verifying key from
  a keyring holding several (OpenPGP packet splitter).
- Install the package from its repository's release (`name/<release>`),
  declare one source per URI and suite, support only the capture host's
  architecture, and refuse Ubuntu Pro repositories.
- List only library packages the computer can install; walk libraries only
  for vendor installs, with RPATH inherited as ld.so does, normalized
  paths, and DT_NEEDED bounded while reading.
- Put --no-sandbox after the program an env wrapper launches; keep the
  gpgv folder's owner when its removal fails; respect --max-file-bytes for
  keys; wait 0.25 s on a busy SQLite database in data/get.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* docs(desktop): keep the vendor spec's gpgv command on one line

A code span broken across lines left `<binary keyring>` for VitePress to
read as an unclosed HTML tag, so the docs build failed.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* feat(desktop): add a validated task to exported desktop applications

Each capture can now yield one agentenv task in its exported bundle. An
agent writes the task (a prompt plus declarative checks over the app's
data/get views); REA validates it and stays model-free.

- `describe-desktop-application-task` summarises a capture's net change
  per file (role, format, views before and after) and drafts checks.
- Checks: file presence, lines present/absent/counted, JSON-pointer values,
  SQLite rows and counts. REA keeps a task only if a check fails on the
  seed and every check passes on the captured end state; a file that was
  not retained at the baseline counts as absent, as the computer starts.
- `export-desktop-application --task` writes tasks/NAME.json (deploy,
  agent, skills, recording, prompt, verifier), a compiled verify.py that
  reads data/get, and an eval. A boundary test runs the verifier under
  python3 and checks it agrees with REA's evaluator on every check kind.
- Docs, spec and skill guidance, with the solve-rate recipe.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* test(desktop): keep the seed test in its own block

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* docs(desktop): record the task verifier driven in an agentenv computer

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* docs(desktop): record the Typora task run in an agentenv computer

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): keep task checks bounded, complete and attributable

- line_count counts lines holding a substring (contains) instead of
  matching a regular expression, which could stall the verifier on
  agent-written text and read differently in Python.
- value_equals of a whole object or array is undecided on a truncated
  view.
- The draft keeps a database whose rows changed under an unchanged hash,
  and a file whose truncated views match while it changed.
- A task file that cannot be read keeps the reader's detail, and a failed
  cleanup keeps the read failure as its primary.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): leave a file with one version out of the task draft

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* docs(desktop): update the task verification's test counts

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* docs(desktop): record the task solve rate with Claude Code and Sonnet 5.5

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* feat(desktop): capture and export apps installed from a downloaded .deb

capture-desktop-application --package-file reads the file's control fields
with dpkg-deb and records its SHA-256, size and dependencies when it holds the
installed package; the file itself is never kept. The library walk now also
runs for local installs.

export-desktop-application --package-url declares agentenv's
Download(url, sha256) for that file, its dependencies and library packages as
apt packages, and a run script that installs it with dpkg.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): seed app-named dotfiles and respell UTF-16 seeds

The capture now treats dotfiles in the home named after the application
(.varicad-cfg.ini, .notesrc) as state roots, so a file the app only reads
during the capture is still seeded. The exported seeding respells the
captured home in UTF-16 text files with a byte-order mark, keeping the mark.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): hold readiness until the app's own window shows

An exported app is ready only once a window of its class that the taskbar
lists is shown, so a splash screen of the class, which skips the taskbar, no
longer counts as the app being up.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* docs(desktop): record VariCAD captured, exported and run in an agentenv computer

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): keep exported views strict JSON for infinite and inexact numbers

The exported data/get spells infinite and negative-zero SQLite reals as REA's
SQLite reader does ("Infinity", "-Infinity", "-0"), and refuses a JSON file
holding a number that reading would change (1e999, integers past 2^53, -0,
rounded fractions) with the state view's own error, instead of a view with
an infinity in it.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): keep package-file facts tied to one file and URLs unechoed

- A --package-url refusal never repeats the URL, and credentials are checked
  before the scheme.
- The package file's identity must hold between dpkg-deb's read and the hash.
- A failed close keeps its cleanup owner even when the capture is cancelled.
- Readiness also ignores windows typed as splash screens.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): record database logs and keep state changes distinct

- A selected path that is not a directory brings its -wal and -journal as
  content roots, so the capture records whether they exist and retains them.
- The state view treats a file as absent only under recorded content roots
  and refuses a database whose log presence is unknown.
- JSON changes list containers too, so an array that becomes an object with
  the same members is a change.
- Key file entries escape the key as a JSON pointer segment, so [a/b] c and
  [a] b/c stay apart.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): keep watching through unread samples and late workers

- An unreadable window list is unknown, not zero windows, and is named in
  the limitations.
- Before ending the session, live run-token carriers no parent link reached
  are tracked; an unreadable process table leaves the exit unknown.
- An env prefix's assignments find the program and name its XDG folders.
- flatpak run options that take a value are skipped with it, -- is honoured
  and a /arch/branch suffix is dropped from the id.
- State directories include the entry's full id.
- Path options refuse empty values; roots count toward the entry limit.
- A capture file whose close failed stays owned and is retried on discard.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): bound apt sources, keep older captures and cleanup owners

- Sources files parse into one stanza per line or deb822 paragraph with its
  URIs and suites kept as lists, so no URI x suite product is built.
- Repository architectures and release are optional, so captures written
  before they were recorded parse; the export treats them as unrestricted
  and unknown.
- Library sources are matched against every index of a declared
  repository's URI, suite and components.
- Two failures side by side keep both causes and both cleanup owners, and a
  host file whose close fails reports a lease on its handle.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): match escaped key file entries and suggest containers through members

- The draft's key file lookup uses the state view's escaped `group/key`, so a
  key holding `/` or `~` still gets its suggestion.
- JSON and XML changes now list containers too; the draft suggests an added
  or removed container through its listed members, and a container only
  when none of its members is listed.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): read relative PATH entries from the launch folder

A program, or an empty or relative PATH entry, is resolved from the folder the
program starts in, as the launch does, so `env PATH=. app` with the entry's
Path still finds the app.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* perf(desktop): compare JSON views on one shared path

JSON and XML changes are found by walking both trees with one shared pointer
path, building a pointer only for a listed value, so memory follows depth
rather than every container's full path. A pointer over 4096 characters is
counted but not listed. A 256-level document with 4000-character keys went
from about 251 MiB of heap to under 1 MiB.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): keep JSON Lines as text in the exported reader

The exported reader parses the whole text before an inexact number makes it
JSON with an error, so JSON Lines with an integer above 2^53 stay text as in
REA. Over-long integer spellings are unsafe without converting them. The
guide no longer claims large integers keep their value.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): keep the state-path help free of dash-led words

The CLI alias check reads `-wal` and `-journal` in help text as short flags,
so the help names the write-ahead log and rollback journal instead.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): never record or export apt source credentials

- Source URIs lose any user name and password as they are parsed, the way apt
  splits them, and so do index-target URIs and descriptions and the sources
  apt-cache policy lists, so matching works whether or not apt prints them.
- A repository whose entry held credentials is marked
  `uri_credentials_removed`, and the export refuses it, or an older capture
  whose URI still holds them, with a reason that names no URL.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): look programs up without normalizing their paths

Program paths and PATH entries are joined rather than resolved, so `..` after
a symbolic link means what it means to the launch. The lookup moves to its own
module.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): note inexact JSON numbers with a flag, not a list

The exported reader only needs to know whether any number was inexact, so it
keeps a boolean instead of every rejected spelling.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): refuse older captures that still hold apt credentials

A capture written before credentials were removed counted the credentialed
repository's libraries as installable, so the export refuses it whole and asks
for a new capture rather than declaring packages no source offers. Recorded
policy sources are redacted in export messages too.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* test(desktop): keep the credential fixture on an example host

A login on a real host reads as a secret to the commit scanner, so the older
capture's fixture uses apt.example.com like the other credential tests.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): tidy looked-up paths and search relative entries only for env

Empty and `.` segments are dropped from a looked-up program path, which keeps
`/snap/bin/` entries recognisable as snaps, while `..` is still left for the
kernel. Relative and empty PATH entries are searched only in the PATH an `env`
prefix sets, which travels with the exported launch; the host's own PATH does
not.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): keep excluded and unwalked database logs unknown

The capture records the paths every walk left out, and the state view treats
a log as absent only under content roots the baseline walked completely and
outside those exclusions, so an excluded or unvisited log leaves the database
unread rather than read without it.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): judge JSON numbers after duplicate keys settle

The exported reader marks an inexact number instead of flagging it during the
parse, then looks for marks in the parsed value, so a number a later duplicate
key overwrote no longer refuses the file, as in REA.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): redact a repository's policy source when it names it

An older capture whose policy source matched no sources entry kept that text
whole, and the export named the repository by it; the export now names it
without any user name or password.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): never signal the launch group on unknown membership

When the current read cannot observe a carrier's process group, the carrier
is signalled on its own instead of letting an older process-table row grant
a group-wide SIGTERM.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): look programs up in the launch's order and refuse host-relative finds

The lookup searches PATH as the launch does, an empty entry meaning the
launch folder, so inspection and launch name the same program. A program found
only through a relative or empty entry of the host's own PATH is refused,
since the exported computer would not have it; an env prefix's PATH travels
with the command.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): count unchecked paths and keep logs behind them unknown

Each walk counts the paths it could not stat and the directories on another
device it did not enter, and the checkpoint records it as `unchecked_paths`.
The state view treats a log as absent only when the baseline left nothing
unchecked, so a log whose stat failed stays unknown.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* perf(desktop): scan parsed JSON with one iterator per level

The check for marked numbers walks the parsed value with an iterator per
nesting level instead of copying each container's children; a million-entry
array went from about 15.7 MiB to 8.1 MiB of peak traced memory.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): start a relative program from its captured folder

An exported launch whose program path is relative, such as `./app` from an
entry's Path, now changes to the captured working directory first, as it
already did for relative arguments.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>

* fix(electron): reject non-directory scenario roots before launch (#8967)

* fix(contracts): align managed example MethodDef scope (#8966)

* docs(debugger): document configurable session limits (#8963)

* docs(debugger): document configurable session limits

* docs(debugger): clarify GDB control command deadlines

* docs(debugger): qualify configurable GDB output budget

* docs(debugger): clarify one-shot CLI settings scope

* docs(debugger): preserve repository line endings

* docs(testing): explain npm launcher selection in PowerShell (#8962)

* docs(mcp): explain PowerShell launch environment scope (#8961)

* docs(mcp): explain PowerShell launch environment scope

* docs(mcp): qualify saved setup selections and OpenCode environment

* fix(native): declare temporary filesystem writes for inspect_macho (#8959)

* fix(environment): retain ID ordering with missing clocks (#8957)

* fix(environment): retain ID ordering with missing clocks

* fix(environment): compare known creation clocks across gaps

---------

Co-authored-by: hhang <169027046+xu91102@users.noreply.github.com>

* fix(gpu): distinguish ELF string scan limits from corruption (#8955)

Co-authored-by: hhang <169027046+xu91102@users.noreply.github.com>

* fix(setup): replace the fixed Hopper download deadline with a stall timeout (#7150)

* fix(setup): replace the fixed Hopper download deadline with a stall timeout

Hopper package downloads aborted after a fixed 120 s, which was also the
largest deadline the download owner accepted. The current 32 MB Linux
package needs about 132 s at the reporter's sustained 245 KB/s, so setup
could never finish on that connection, and the timeout surfaced only as
Node's generic abort message.

Abort a download when no response bytes arrive for 30 s, or when it
outlives a 15-minute overall bound, with a tagged
HopperDownloadTimeoutError that names the URL, the limit reached and the
bytes received. Linux and macOS setup already relay a thrown download
error's message; the Linux publisher now keeps it for release metadata
and public key fetches instead of a generic verification failure.
Metadata and key fetches keep their 10 s bound.

Refs #7077

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(setup): keep the macOS release feed on the metadata limit

The stall-timeout change left the macOS release feed fetch on the
package download bounds. That fetch could then wait up to 15 minutes
instead of the 120 s it had, while the installation guide says release
metadata keeps a 10 s limit. Only the Linux publisher owned that limit.

Move the 10 s metadata limit into HopperDownload.ts beside the package
bounds. The Linux feed and key fetches use it, and the macOS installer
now passes it for its feed fetch through the installer host.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>

* fix(cli): parse environment-serve --port and --host like rea mcp --http (#7092)

* fix(cli): parse environment-serve --port and --host like rea mcp --http

environment-serve declared --port as a number, so incur coerced the flag text with Number(): an empty --port= bound an ephemeral port instead of failing, and 0x1F90 or 1e3 were reinterpreted. --host accepted whitespace. docs/cli.md says these flags resolve like rea mcp --http, which accepts only decimal port text and a non-empty trimmed host. The flags now use the same rules and are refused before binding.

* refactor(cli): reuse the shared MCP listener port and host schemas

* fix(adb): separate unresolvable paths and host capacity in adb spawn failures (#6188)

* fix(adb): name unexecutable adb paths in readiness refusals

When REA_ADB_PATH or the PATH-resolved adb is a directory or a file the
host refuses to execute, the version probe fails at spawn with EACCES or
EPERM. That fell through to the generic "did not report a usable version"
refusal, which named neither the path nor the cause.

Classify those spawn errors as binary_not_executable (provider rejection
executable_missing), name the selected path and errno, and give
remediation for the environment, PATH and host-policy cases. The generic
fallback now names the selected path too.

Fixes #5689

* fix(process): admit synchronous spawn errors as captured failures

Node throws spawn errors other than EACCES, EAGAIN, EMFILE, ENFILE and
ENOENT synchronously from execFile. execFileBytes called execFile inside
its Promise executor, so ENOTDIR or EPERM became a rejection without
capture fields and execFileOutputFailure returned undefined. Consumers
that classify by failure code, such as the adb version probe, could not
see the code, which left the adb EPERM branch unreachable.

Catch synchronous spawn errno errors at the capture boundary and attach
the same empty capture an asynchronous spawn failure carries. Argument
validation errors stay unadmitted.

The adb version probe now reports an ENOTDIR selected path, such as a
REA_ADB_PATH whose parent is a regular file, as a missing binary with
the filesystem error code instead of the generic version refusal.

* fix(process): expose spawn failures from the capture owner

execFileBytes knows when a command never started, but
ExecFileOutputFailure did not say so, so consumers reread raw syscall
and code fields and disagreed. Mark both the synchronous throw and an
asynchronous `spawn <path>` error with `spawnFailed: true`, and set
`path` on the synchronous error to match the asynchronous shape.
Argument validation errors stay unadmitted.

Consumers now use the owner field:

- inspectAdbClient never reports a spawn errno as `exit_code`. ENOENT,
  ENOTDIR, ELOOP and ENAMETOOLONG are `binary_missing`; EACCES and EPERM
  stay `binary_not_executable`; any other spawn errno, such as EINVAL,
  is `binary_not_executable` with a path-naming "could not be started"
  message. Each records `filesystem_error` and `path_source`. EACCES
  remediation also names parent directory search permission, and EPERM
  remediation no longer names host policy as the only cause.
- DarwinProcessRunTokenReader tags every not-started compiler as
  `spawn_failed`, not only ENOENT. EACCES, EPERM and ENOTDIR were
  previously `failed`.
- NativeDmgArtifactReader uses one not-started rule for both
  `processNotStarted` (previously `spawn ` only, so synchronous errors
  were missed) and the ENOENT unavailable/io split (previously any
  `spawn` prefix). Its fake hosts now reject with real execFileOutput
  spawn failures.

* fix(process): classify spawn failures consistently across consumers

Admit synchronous and asynchronous spawn errnos through one helper that
requires an errno and a `spawn` or `spawn <path>` syscall. The
synchronous shape now also gains `spawnargs`, so both shapes match.

Use the owner's `spawnFailed` fact in the remaining consumers:

- inspectAdbClient reports exhausted host capacity (EAGAIN, EMFILE,
  ENFILE, ENOMEM) as a host failure to retry and no longer tells the
  caller to change REA_ADB_PATH. Path-resolution errnos come from a
  predicate the filesystem owner exports.
- runAdbCapture says adb could not be started instead of claiming an
  exit code for a process that never ran.
- The Darwin compiler probe words every spawn_failed outcome as a start
  failure, not a compilation failure.
- Asset catalog inspection treats any assetutil that never started as
  unavailable, not only ENOENT.

* fix(process): report host spawn capacity as a retryable constraint

Spawn errnos that report exhausted host capacity (EAGAIN, EMFILE, ENFILE,
ENOMEM) were classified by adb readiness alone. assetutil reported them as
an unavailable tool, which marked inspect_asset_catalog unavailable in the
session, and adb commands reported them as protocol failures.

Classify them once in the process capture owner and report a retryable
capacity constraint with recovery advice from assetutil and adb commands.

* docs(adb): describe host capacity failures from device operations

* fix(adb): report exhausted host spawn capacity as runtime unavailability

A host that cannot start adb for lack of process, memory or descriptor
capacity is not a configuration problem. Give it its own failure code and
map it to the runtime_unavailable provider rejection instead of
not_configured.

* fix(adb): report probe-time host capacity as a retryable constraint

A device operation whose adb version probe could not start for lack of host
capacity was refused as capability_unavailable without retryable. It now
reports the same retryable capacity constraint as a later adb command.

* fix(adb): keep the selected adb path in probe-time capacity errors

The retryable capacity constraint raised at the version probe dropped the
selected_binary and path_source diagnostics the refusal used to carry.

* refactor(adb): keep the spawn-failure fact to adb consumers

Restore the DMG reader, Darwin compiler probe and assetutil to main. The
capture owner still marks a never-started command, including the spawn
errors Node throws synchronously, and only the adb readiness probe and
adb commands read that fact.

* test(adb): assert spawn-failure facts instead of refusal wording

The new adb tests compared complete refusal sentences and banned an old
phrase. They now check the errno, selected path, path source and the
owner's spawn-failure marker, so wording edits do not break them.

* fix(adb): own one host-capacity remediation and cover the spawn route

The host-capacity constraint and the configuration failure each carried their own remediation sentence. AdbConfiguration now owns the text and both use it, so the constraint's remediation.action equals diagnostics.remediation.

The synchronous spawn-throw test now runs on Node's execFile route and on the owned spawn route adb uses (stopSignal). The provider test covers inspect_adb_client under EMFILE next to list_adb_devices, and the docs say which operations report the retryable capacity constraint and which report runtime_unavailable.

* fix(process): report EMFILE and ENFILE spawn failures without stdio

After an EMFILE or ENFILE spawn failure Node creates no stdio, so the
owned stop-signal route threw a TypeError while reading the streams and
the later spawn error went unhandled. Attach the error listener first and
capture absent streams as empty, so adb reports retryable host capacity.

* fix(adb): keep a completed push when host capacity stops its digest check

A capacity failure starting sha256sum came back as a retryable error even
though adb push had already written the file. Repeating the request with
overwrite=false is then refused because the destination exists.

Return the receipt with an unavailable device digest and name the capacity
failure in its limitations, so the caller is told the transfer is unverified
rather than advised to retry.

* docs(adb): list host capacity as an unverified push case

---------

Co-authored-by: t <t@t>

* test(gdb): expect configurable stream truncation diagnostics (#8965)

* test(gdb): expect configurable stream truncation diagnostics

* build(gdb): include prerequisite duplicate-import repair from #8884

* fix(javascript): resolve module-level Electron options in functions (#8960)

* fix(javascript): resolve module-level Electron options in functions

* fix(javascript): limit module option ancestry walk

* fix(javascript): preserve uncertain captured argument ordering

* fix(javascript): retain hoisted activation uncertainty

* fix(javascript): retain function ownership through loops

* fix(javascript): account for classic global activations

* fix(javascript): bind first activations to lexical identities

* fix(javascript): retain uncertain global activation timing

* fix(javascript): isolate receiver facts and share computed reads

* fix(javascript): retain projected and opaque global activations

* fix(javascript): refresh activation bounds as opaque effects grow

* fix(ci): format website watch directories without changing configuration

* fix(javascript): share source reads across opaque-effect updates

* fix(javascript): retain constructed-code global activation bounds

* fix(javascript): share runtime activation and receiver facts

* fix(javascript): reuse pattern reads and function positions

* fix(javascript): isolate copied paths and preserve runtime reads

* style(javascript): format migrated reference imports

* fix(javascript): normalize constructor activation and receiver effects

* fix(javascript): retain aliased receiver timing and lexical global this

* fix(javascript): preserve effect-free receiver identity across activations

* fix(javascript): retain outer activation and prototype effects

* fix(javascript): index implicit reads without deep path rescans

* fix(javascript): retain aliased prototype and parameter read uncertainty

* fix(javascript): index reflected reads through intrinsic invocation facts

* fix(javascript): retain unresolved global activation reads

* chore: refresh PR branch after review fix publication

* fix(javascript): retain projected receiver reads and cache method facts

* fix(javascript): retain inherited and implicit activation reads

* fix(javascript): retain caller-owned this uncertainty

* fix(javascript): retain reflected reads with unresolved spread arguments

* fix(javascript): preserve enclosing activation for decorators

* fix(javascript): track intrinsic literal prototype effects

* fix(javascript): retain catch activation from implicit reads

* perf(javascript): reuse effective keys for projected reads

* fix(javascript): retain possible caller-owned ambient effects

* fix(uninstall): preserve caller-selected Kuna caches during purge (#7921)

* fix(uninstall): keep a managed cache namespace whole when it holds a caller-selected Kuna cache

purge --purge-data reported a REA_KUNA_CACHE_DIR selection below the default Kuna cache as retained, then removed it together with its parent namespace. A namespace that contains the selection is now retained and reported, so the retained report is true.

Fixes #7344

* fix(uninstall): also keep a namespace equal to, or reached by symlink traversal from, the selected Kuna cache

Compare the namespace and the selection with the same normalization, treat an equal path as contained, and resolve existing paths before planning so a symbolic link followed by .. is judged by where it leads.

* fix(uninstall): judge a selection with parent traversal where the filesystem resolves it

Collapsing .. lexically contradicts the existing rule that parent traversal after a symbolic link leads elsewhere, and broke the retained-through-symlink-traversal test. Compare spellings without .. directly and resolve existing paths for the rest, so the symlink-parent case still purges the default cache while a selection that resolves into a managed namespace is retained.

* fix(uninstall): keep a namespace whole when the selection's location is unknown

A realpath failure other than ENOENT/ENOTDIR (for example EACCES under an
inaccessible parent) no longer counts as "absent". Each namespace that may
contain the caller-selected Kuna cache is retained instead of purged.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>

* fix(changed-behavior): withhold equality for unknowns and contradictions (#7624)

find_changed_behavior derived behavior_status from each process
comparison's aggregate status alone. An unchanged comparison whose
first_divergence was unknown (residual unknowns prevent proving no
divergence) and a consistent contradiction comparison both fell
through to observed_unchanged, with no unresolved finding and no
changed-behavior registry unknown.

An unchanged comparison with unknown divergence now counts as unknown
and adds one comparison-level unresolved first_divergence finding
carrying its reason, as artifact comparisons already do for coverage.
A contradiction status makes the aggregate unknown, and contradiction
dimensions are classified and counted as contradictions instead of
unresolved branches. Complete unchanged comparisons stay
observed_unchanged and changed comparisons with unknown localization
stay observed_changed.

Fixes #7384
Fixes #7383

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>

* fix(process): reject contradictory filesystem capture facts (#7631)

* fix(process): reject captures whose top-level filesystem facts contradict their checkpoints

A process capture records its filesystem state twice: files_before,
files_after and filesystem_effects at the top level, and the initial
and final filesystem_checkpoints. Validation never reconciled the two,
and comparison reads only the checkpoints. A caller-authored capture
recording a created file at the top level while its final checkpoint
was empty was therefore accepted and compared as unchanged.

Semantic validation now requires the initial checkpoint to match
files_before with no effects, and the final checkpoint to match
files_after and filesystem_effects. The native producer builds both
representations from the same snapshots, so produced captures are
unaffected; consistent created-file captures still compare as changed.

Fixes #7371

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* test(process): cover file-list checkpoint mismatches independently of effects

Every rejected case in the checkpoint-consistency test also disagreed on
effects, so removing both file-list comparisons left it passing. Add
initial and final checkpoint cases whose file lists alone disagree while
effects and coverage accounting stay valid.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>

* fix(process): report deadlines expiring during final cleanup (#7635)

* fix(process): report a deadline that elapses during final cleanup as a timeout

runOwnedCommand checked its absolute command deadline before awaiting
process cleanup, but on the ordinary successful path it consulted only
the caller's cancellation signal afterwards. A command whose deadline
expired while successful cleanup was still awaited therefore resolved
as success.

After cleanup, an elapsed deadline now throws OwnedCommandFailure with
reason "timeout" and the completed snapshot, as docs/tool-design.md
requires a final signal check after the last awaited finalization step.
Existing primary failures, caller cancellation and incomplete-cleanup
classification keep their precedence.

Fixes #7369

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* test(process): drive the cleanup-deadline regression with controlled time

The regression test gave output collection 100 ms of real time before
the deadline. On a busy worker the deadline could expire during
collection instead, taking a different failure path and failing the
test even with the fix. Use fake timers, wait until cleanup has
started, then advance past the deadline and release cleanup, so the
ordering no longer depends on worker speed.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>

* fix(enhanced): bound batch decompile input size (#5937)

* fix(artifacts): handle early ASAR extraction cancellation (#5672)

* fix(artifacts): own source errors during output setup

* fix(artifacts): join silent source destruction before returning

* fix(artifacts): retain source cleanup failures with primary errors

* fix(artifacts): join source finalization and classify secondary failures

* fix(firmware): separate source cleanup from output rollback

* fix(artifacts): retain live source cleanup dependencies

* fix(artifacts): preserve source failure completion and semantics

* fix(artifacts): retain scope cleanup owners and typed failures

* fix(artifacts): keep cleanup classification and admission recovery

When the operation completed and only scope cleanup failed, keep the cleanup failure's own reason instead of reporting io, matching main (fixes artifactProvider.cleanupRetry). When a typed primary is rebuilt with pending scope cleanup, carry its userMessage and ASAR header admission so callers keep the configured ceiling and setting.

* fix(artifacts): translate plain file-close failures through the reader path

The outer file-cleanup branch rebuilt every ArtifactFileCleanupFailure as a
ProviderAdapterError, so dyld reads lost their io, unavailable, format and
cancelled reasons and their exact file-cleanup cause. Compose separately only
when the failed primary owns its own translation (a domain error, source
failure or scope cleanup failure); raw and reader primaries are already
projected by the file failure with its exact lease.

* fix(artifacts): bound source destruction by cancellation and keep wrapper admission

After cancellation, SafeOutputTree.write could wait indefinitely for a source
whose destruction did not settle, both in the destroy join and in the
iterator's wait for close. Both waits now end at cancellation plus a fixed 1 s
grace, modeled on the process-output closure grace. A destruction that
outlives it is reported as incomplete source cleanup under an exact lease that
releases only once closure is observed without a late error.

ArtifactResourceCleanupFailure and SafeOutputSourceFailure now keep the
primary's admission, matching withCleanup.

* fix(artifacts): keep one settled wait while observing a stuck source

observeClosure raced the same pending close promise against a new timer every
10 ms, so a source whose destruction never settled accumulated one reaction per
poll for as long as it stayed open. Each poll now waits on its own promise that
the close listener or the unref'd timer settles, leaving one pending wait and
one close listener. The lifecycle test also asserts that a late close releases
the retained owner without an explicit retry.

* fix(artifacts): settle pending reads before cancellation

* test(artifacts): observe the consumed ZIP iterator on cancellation

* test(artifacts): validate projected cleanup resources before sorting

* test(mcp): reserve parent capacity for timeout recovery

* fix(artifacts): contain ASAR cancellation before output consumption

* test(artifacts): hash ASAR cancellation fixture bytes

* fix(decompile): retain inventory limitations and selection (#8466)

* fix(decompile): retain inventory limitations with the latest selection

The manifest and decompile index dropped procedure-inventory
limitations, so a directory separated from its Evidence response could
not explain why functions were selected or omitted. Keep those
limitations on the manifest and in a latest_run index record that also
names the filter and counts that produced them. Older runs remain
represented only by their retained function records.

Fixes #8355

* test(decompile): surface export errors and check function caveats

Address review findings on the inventory-limitation regression:

- Throw the typed export error instead of returning from a failed Result.
- Assert historical function records keep their own pseudocode caveats
  and do not receive the latest inventory warnings.

* fix(pyinstaller): leave PE carrier binary members unmarked (#6730)

The Windows bootloader sets no execute bit on extracted ARCHIVE_ITEM_BINARY
members (the S_IXUSR fchmod in pyi_archive.c is #ifndef WIN32). Mark type b
members executable only when the carrier dialect is posix.

* fix(jeb): reconnect after stale MCP sessions (#3754)

* fix(jeb): reconnect after stale MCP sessions

* fix(jeb): preserve failures for overlapping MCP requests

* fix(jeb): make cleanup operations explicit and stabilize timeout fixtures

* fix(setup): flag unresolved migrated Claude Desktop storage (#8971)

* fix(setup): flag unresolved migrated Claude Desktop storage

* fix(setup): preserve Claude MSIX process view when config is unresolved

* fix(enhanced): restore batch input record limit

* docs(tool-design): audit agent workflow guidance (#8439)

* docs(tool-design): audit agent workflow guidance

* docs(tool-design): check deployed guidance versions

* fix(cli): align ADB directory and package query schemas (#8974)

* fix(cli): align ADB directory and package query schemas

* fix(cli): preserve ADB selector correction details

* fix(devicetree): reject duplicate node paths in Evidence (#8970)

* fix(pe): classify valid DOS targets as unsupported (#7530)

fix(pe): classify confirmed DOS targets as unsupported

Signed-off-by: Rudy Celekli <rudy@gradiahq.com>

* fix(native): reject nonzero reserved ELF dynamic symbols (#7528)

fix(native): validate the reserved ELF dynamic symbol

Signed-off-by: Rudy Celekli <rudy@gradiahq.com>

* fix(evidence): traverse large source link sets safely (#8457)

* fix(verification): use inspected Ghidra JDK (#8440)

* fix(mcp): clarify retained dossier handoff in crash prompt (#8437)

* fix(evidence): clarify unsupported view recovery (#8412)

* fix(evidence): clarify unsupported view recovery

* fix(evidence): explain sensitive capture view refusal

* test(ghidra): check regex recovery at its owning boundary (#8578)

* test(ghidra): check structured snapshot profile mismatch (#8536)

* test(ghidra): check retained historical snapshot evidence (#8381)

* test(ghidra): check retained historical snapshot evidence

* test(ghidra): select historical observations by address

* test(cli): cover Frida argument admission and spawn ordering (#3356)

* fix(cli): reject spawn arguments in Frida attach mode

* test(cli): remove redundant Frida recorder assignments

---------

Co-authored-by: Kaoru0822 <208281322+kaoru0822-kitauji@users.noreply.github.com>

* fix(ghidra): report restricted-host temp write denial on Windows (#8889)

* fix(ghidra): report restricted-host temp write denial on Windows

Add a Windows doctor check that creates and deletes a file under os.tmpdir(), and classify a denied java_home.save in Ghidra startup output with its path, Win32 error 5, and TMP/TEMP remediation. The probe covers REA's own process only; a host that restricts only child processes is reported from the child's output at startup.

Fixes #7075

* fix(ghidra): probe the session root and retain failed probe cleanup

The Windows doctor temp_directory probe now writes under ghidraSessionRoot(), the same root Ghidra session runtimes use, instead of os.tmpdir(), which can differ when the inherited temp path has a dot-prefixed element. A probe file whose removal fails is retained on the doctor resource owner so doctor shutdown retries the removal; the result still reports its path.

* fix(cli): normalize exit status on worker cleanup failure (#8049) (#8050)

* fix(cli): normalize exit status on worker cleanup failure (#8049)

* test(cli): verify SDK output status and finalization rejection on exit

* ci: retrigger checks

---------

Co-authored-by: Sarthak Pandey <sarthak@email.com>

* fix(gdb): keep inferior-tty verification for read-only queries (#5539)

* fix(gdb): keep TTY verification across read-only inferior-tty inspection

The console command path cleared `inferiorTtyVerified` before dispatching
any command whose text merely mentioned `inferior-tty`, so the read-only
`show inferior-tty` query permanently revoked a persistent session's
verified output sink; no in-session path ever restored the flag, and a
later close of a live session failed detach verification with
capability_unavailable.

Exempt the exact read-only query forms (`show inferior-tty` and the MI
`-inferior-tty-show`) from the output-mutation predicate; every other
command mentioning the TTY setting keeps revoking, so mutating commands
still fail closed and detach keeps re-reading the live TTY before
detaching. Cover the query forms, composite commands, and the
inspect-then-close detach path with regression tests.

Fixes #5099

* test(gdb): classify show inferior-tty in the one-shot table and rename the TTY classification table

- Add a 'show inferior-tty' row to the 'classifies one-shot GDB
  commands' table: the read-only query no longer invalidates the detach
  proof, a user-visible one-shot behavior change.
- Rename the 'classifies read-only inferior TTY queries as non-mutating'
  table to 'classifies inferior TTY commands' since two of its rows are
  mutation cases.
- Assert via the existing recorded-commands array that the inspected
  'show inferior-tty' text is actually dispatched, and add an
  execute-path assertion that the MI '-inferior-tty-show' form leaves
  the verified-sink flag intact (defensive exemption: REA's own MI calls
  do not route through this gate).

---------

Co-authored-by: akushonkamen <akushonkamen@users.noreply.github.com>

* fix(browser): report an out-of-range generated position as a selection fault (#7133)

trace_web_source_location reported a well-formed generated_position past
the end of the selected script as invalid_format on generated_position,
with no bounds, so callers were told their input was malformed and not
which coordinate to change. Report out_of_range on the line or column
that is past the end, with its valid bounds, as export_web_scripts and
inspect_web_network_capture now do for their selections.

The position scan now returns the bound it ran past, so the offset and
the reported limit come from one pass and cannot disagree on line
terminators.

Fixes #7132

* fix(captures): classify unresolvable capture paths as capture_path input (#7814)

* fix(captures): classify unresolvable capture paths as capture_path input

Fixes #7636

* test(captures): cover unresolvable descriptor paths

---------

Co-authored-by: Abelo9996 <Abelo9996@users.noreply.github.com>
Co-authored-by: morluto <76467478+morluto@users.noreply.github.com>

* fix(apple): preserve exact integer precision with post-table plist objects (#8910)

* fix(javascript): resolve electron findings through aliases of interop results (#8914)

* fix(javascript): resolve electron findings through aliases of interop results

* fix(javascript): resolve interop aliases iteratively and check target mutations

* fix(javascript): retain possible writes through uncertain aliases and guard positive reads

* perf(javascript): cache alias change status across semantic interop lookups

* fix(javascript): transient Windows private-runtime source-transfer (#8769)

* fix(javascript): transient Windows private-runtime source-transfer

Parent source-transfer into the Windows private runtime root failed with
EPERM on path-based exclusive create. Write through a native transient
private-runtime path that closes the handle after flush so per-job rm
still works, and yield around the sync write so abort deadlines can fire.

* fix(javascript): yield timer phase before Windows source-transfer write

* fix(il2cpp): reject module image references outside retained inventory (#8956)

* fix(ida): admit Docker host-gateway names as local MCP hosts (#8932)

Containerized REA reaches an IDA MCP server on the container host through
host.docker.internal (Docker, Podman compatibility) or
host.containers.internal (Podman). The HTTP registration refinement only
admitted localhost, 127.0.0.1 and [::1], so doctor reported the valid
gateway registration as invalid_configuration.

Admit both gateway names in the registration's local-host set. The
refinement still requires http or https, no URL credentials, and refuses
every other host.

Fixes #8925

* fix(mcp): report target after failed open (#8613)

* fix(mcp): report target after failed open

* test(session): cover failed open receipt ownership

* test(session): verify restored target receipt

* test(mcp): retain target on snapshot mismatch

* test(mcp): retain oversized open failure receipts

* test(cli): avoid continuing session receipt in one-shot errors

* fix(mcp): report provider after failed switch

* test(ghidra): verify failed open preserves annotations

* test(mcp): join queued receipt request before cleanup

* test(session): assert open failure receipts in lifecycle suites

* test(session): keep open-failure receipt checks within function limits

Move the provider-collision case and snapshot fixture setup out of the
functions that grew when both failure receipts were asserted.

---------

Co-authored-by: Cursor Agent <cursoragent@cursor.com>

* fix(prompts): include existing static artifact investigation routes (#8972)

* fix(prompts): include existing static artifact investigation routes

* fix(prompts): preserve workflows in existing family scopes

* fix(prompts): require readers for Apple resource routes

* fix(rizin): keep debug targets off the debugger command stream (#8647)

* fix(rizin): keep debug targets off the debugger command stream

A Rizin debug target inherited Rizin's stdin, which is REA's command
stream. Once resumed, a target that reads stdin consumed REA's commands,
so close returned cleanup_incomplete and the one-shot CLI hung.

Route the target's stdin to the caller-selected TTY alongside stdout and
stderr. Before detaching, refuse a target whose stdin is still the command
stream, so a Rizin or backend that ignores the key gets a specific,
retained failure instead of a resumed target and a timeout.

Fixes #8642

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* test(rizin): keep the stdin test launcher's descriptors under dash

The launcher gated its target with `cat "$2" >/dev/null`. dash applies a
simple command's redirection to the shell itself until the command returns,
so on Ubuntu the waiting shell's fd 1 was /dev/null, and that shell is the
target REA reads in /proc. All 8 Linux-gated tests then failed the existing
output-descriptor check. macOS /bin/sh is bash, which redirects only in the
forked child, so this did not show locally.

Gate without any redirection. Production code is unchanged.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* test(rizin): reject unmodeled commands and own cleanup at acquisition

Address review of the stdin regression tests.

The launcher accepted any unknown line, so the marker that followed could
complete it, and assertions only checked that commands were present. An
added `dc` or a repeated `olj` still passed. It now records an unknown line
and exits, and the tests pin the exact command sequence.

Cleanup hung off module state assigned after setup finished, so a failed
setup left its directory and terminal child behind. Each resource now
registers its own finish hook when acquired, using createTestTempDirectory.

Success checks throw the typed error instead of asserting `.ok`, and the
refusal probe no longer sits inside a loop and conditional.

Production code is unchanged.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>

* fix(ci): align tests with current evidence contracts

* feat(native): report binary hardening for ELF, PE and Mach-O (#8524)

* feat(native): report binary hardening for ELF, PE and Mach-O

Documents inspect_binary_hardening and its CLI equivalent, including
per-property states, supporting evidence, read budgets, and one report
per Mach-O slice. Explains that missing protection imports remain
unknown, signature presence does not establish validity, and hardened
runtime requires inspect_signature. Adds hardening links throughout the
documentation. The supplied diff also removes the advanced CodeQL
workflow and configuration, along with snapshot-binding mismatch
guidance.

* fix(native): validate declared payloads and dynamic tables before hardening rows

Run the shared range checks for ELF, read imports from the dynamic tables
rather than section metadata, and keep an unresolved symbol count apart from
an absent table. Check every Mach-O command before building rows and retain
only the offsets the rows need.

Make the verifier's readelf output wide, check the emitted format before
parsing Mach-O, and place the sources before the libraries in the link.

* fix(native): share Mach-O segment admission with hardening reads

A segment with a section count its cmdsize cannot hold passed the hardening
reader and could enable restrict_segment. Move the size, section count and
file range checks to a shared admission that readMachoImage and the hardening
reader both use, and pin the ELF load-size case with a regression test.

* fix(hardening): reject Mach-O section payloads past the slice and empty ELF interpreters

Segment admission never checked each section's payload range, so a
file-backed section past the slice still produced rows. Decode sections with
the section header owner and mark the slice malformed when a payload leaves
it; zero-fill and empty sections own no file bytes and are exempt.

admitInterp accepted a NUL first byte in a longer extent, which counted an
empty interpreter as PIE evidence. It now requires a nonempty path.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
Claude-Session: https://claude.ai/code/session_01KuWHGvzJkrhCqjtEHUwqyH

* fix(native): read CFG instrumentation from decoded GuardFlags

Use the IMAGE_GUARD_CF_INSTRUMENTED flag that guardFlagRecord already
decodes instead of masking the raw GuardFlags word a second time.

* fix(native): reject ELF table spans a second PT_LOAD remaps

The hardening reader mapped DT_STRTAB, DT_SYMTAB and hash tables through
the one PT_LOAD containing the table's first address. A second PT_LOAD
starting inside the table could map the rest of it from other file bytes
and the reader still reported parsed import evidence.

Cap each mapping at the next PT_LOAD that starts inside it, reject a
requested range that crosses that boundary, and stop hash reads at the
same limit, matching the conflicting-mapping refusal in readElfSymbols.

* fix(native): dedupe ELF note tables only on shared boundaries

The hardening reader dropped any note table whose bytes another table
already covered. A covering SHT_NOTE can hold a non-GNU note whose
descriptor is itself a complete GNU property note, while PT_NOTE names
that inner note directly. Walking only the outer stream missed the GNU
marker and reported CET disabled.

Drop an alias only when it starts and ends on boundaries of admitted
tables, which are note boundaries of the walked streams. Any other
covered alias leaves the feature rows unknown, as a partial overlap
already does.

* fix(native): admit every Mach-O symbol record after a canary match

The Mach-O stack protector scan returned as soon as it found an
undefined ___stack_chk_fail, so a later undefined symbol whose n_strx
lay outside the string table was never checked. The same damaged table
parsed or failed as malformed depending only on record order.

Keep the match and finish the bounded record walk. Records after the
match are only checked against the string table bounds, so their names
are not read or charged to the scan budget. The ELF reader already
admits its whole symbol table before matching names.

* fix(native): accept ELF load aliases with the same file translation

The hardening reader treated every PT_LOAD that starts inside a table,
or that also contains the table's address, as a conflicting mapping.
A load with the same address-to-file translation names the same file
bytes, so tables it overlaps still have one interpretation, and the
canonical ElfLoadMap already merges such spans.

Treat equivalent loads as one interpretation. A load with a different
translation, or the zero-filled tail of an equivalent load, still ends
the usable range, so a remapped table is still rejected.

* fix(native): keep same-span ELF note tables with different alignments unknown

A section and a program header that share endpoints were treated as one
note stream even when their effective note alignments differed. Walking the
same bytes at 4 and 8 can frame different notes, so dropping the second table
could hide a GNU property word and report CET or BTI as disabled.

Require matching effective alignment at both endpoints, and no alignment
change inside the covered span, before treating a table as an alias.
Otherwise mark the feature rows unknown. The fixture's .note.gnu.property
section now declares the class's note alignment, as toolchains emit it.

* refactor(native): read LC_SYMTAB through the shared fixed-word decoder

Move the Mach-O fixed uint32 command layouts out of MachoCommandNames
into domain/apple/machoLoadCommands so there is one owner of those
offsets. MachoCommandNames and the hardening reader now both decode
through it; the hardening reader keeps its own bounds and import policy.

* fix(native): skip Mach-O common definitions in canary imports

A common definition sets N_UNDF|N_EXT like an import but stores its
allocation size in n_value. An object holding only
`int __stack_chk_fail;` therefore reported stack_protector: enabled.

Require a zero n_value before an undefined external counts as an
import, for both nlist widths.

* refactor(native): read linkedit data commands through the shared fixed-word decoder

readMachoLinkeditDataCommand reproduced the dataoff/datasize offsets that
FIXED_WORD_FIELDS already owns. Take the command and decode through
decodeMachoFixedWordFields, as readMachoSymtabCommand does, keeping the
truncation and endianness behavior.

* fix(native): skip empty SHT_NOTE sections in ELF hardening

A zero-sized SHT_NOTE owns no bytes, so the section directory marks it
not file-backed and the hardening reader rejected the whole image as
malformed, while readElfImage accepted the same bytes. Skip empty note
sections before the file-backing check; they have nothing to walk.

* fix(scripts): run hardening verifier commands through the shared owner

The binary hardening verifier started its probes and compiler drivers with
raw spawnSync, which bypassed the src/process/ supervision that AGENTS.md
requires. Every launch now goes through createVerifierCommands, and the
temporary root is removed only after the owner closes cleanly.

* fix(scripts): clean up hardening verifier commands on Ctrl-C

SIGINT or SIGTERM ended Node before withVerifierCleanup ran, so detached
compiler trees and the temporary root could outlive the verifier. The
verifier now turns those signals into an abort that every owned command
receives, so cleanup closes the owner and removes the root before exit.

* fix(scripts): fail the hardening verifier when a signal lands outside a command

Only the owned commands read the interruption signal, so a SIGINT or
SIGTERM during the final cleanup or between commands was recorded and
then dropped, and the verifier exited 0. After cleanup settles, the
verifier now throws the interruption reason. A failure the operation or
its cleanup already raised still leaves first and is not replaced.

* fix(native): fail Mach-O slices with a malformed encryption command

The hardening reader turned every malformed status from the shared
encryption reader into an unknown `encrypted` row, so a short
LC_ENCRYPTION_INFO_64 or an encrypted range past the slice still left the
slice parsed with a full report.

Only two conflicting encryption commands stay an unknown row now. Any other
encryption defect fails the slice like other structural command failures.

* fix(native): ignore STB_LOCAL undefined ELF symbols as imports

A local undefined __stack_chk_fail or __memcpy_chk is never resolved
against another object, so it does not establish an external import.
Skip STB_LOCAL bindings when reading protector signs, and give the
fixture's positive symbols STB_GLOBAL binding.

---------

Co-authored-by: Matt Van Horn <455140+mvanhorn@users.noreply.github.com>
Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>

---------

Signed-off-by: Rudy Celekli <rudy@gradiahq.com>
Co-authored-by: Kaoru0822 <208281322+kaoru0822-kitauji@users.noreply.github.com>
Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
Co-authored-by: Edgar Arakelyan <edgar.arakelyan@scale.com>
Co-authored-by: ShuaixinHuang <1836656514@qq.com>
Co-authored-by: highmachs <samarjeeth06@gmail.com>
Co-authored-by: hhang <17309584214@163.com>
Co-authored-by: hhang <169027046+xu91102@users.noreply.github.com>
Co-authored-by: Paritosh Lahre <155938586+SandstromPL@users.noreply.github.com>
Co-authored-by: Adolanium <94890352+Adolanium@users.noreply.github.com>
Co-authored-by: 김준호 <101695482+chordpli@users.noreply.github.com>
Co-authored-by: t <t@t>
Co-authored-by: Hasan Zayni <36798269+dark13b@users.noreply.github.com>
Co-authored-by: Salman Almutairi <141588124+salmanalmutairi1@users.noreply.github.com>
Co-authored-by: Lucien <164857476+dakjdakd@users.noreply.github.com>
Co-authored-by: RRFZ <247457381+Plastic-time@users.noreply.github.com>
Co-authored-by: 2SinceJuly <hongjxiao@gmail.com>
Co-authored-by: Wade <160517347+Sriram-PR@users.noreply.github.com>
Co-authored-by: Martin Klein <36695017+flitzrrr@users.noreply.github.com>
Co-authored-by: morluto <76467478+morluto@users.noreply.github.com>
Co-authored-by: Rudy Mizrahi Celekli <47457359+rudycelekli@users.noreply.github.com>
Co-authored-by: xin zhuang <65798732+1052326311@users.noreply.github.com>
Co-authored-by: Beqa <91750923+BeqaKs@users.noreply.github.com>
Co-authored-by: NoThing <sarthakpandey5667@gmail.com>
Co-authored-by: Sarthak Pandey <sarthak@email.com>
Co-authored-by: akushonkamen <74654766+akushonkamen@users.noreply.github.com>
Co-authored-by: akushonkamen <akushonkamen@users.noreply.github.com>
Co-authored-by: amyanger <57688398+amyanger@users.noreply.github.com>
Co-authored-by: Abel Yagubyan <abelyagubyan@berkeley.edu>
Co-authored-by: Abelo9996 <Abelo9996@users.noreply.github.com>
Co-authored-by: Jiabin Yin <54463072+Nolkee@users.noreply.github.com>
Co-authored-by: Cursor Agent <cursoragent@cursor.com>
Co-authored-by: Mohamed Ayoub Eleuch <58662566+AyoubElleuch@users.noreply.github.com>
Co-authored-by: Kaoru0822 <kanadekitauji@proton.me>
Co-authored-by: Matt Van Horn <mvanhorn@users.noreply.github.com>
Co-authored-by: Matt Van Horn <455140+mvanhorn@users.noreply.github.com>
Co-authored-by: gensokyo-dev <gensokyo-dev@users.noreply.github.com>
2026-11-06 02:06:39 +08:00

100 KiB

Native binary investigation

Use a native provider to discover functions, inspect instructions and pseudocode, follow references, and examine database types. Static resources and runtime observation complement that analysis when they answer a specific question.

inspect_macho reports build platforms from the selected slice. Legacy LC_VERSION_MIN_IPHONEOS, LC_VERSION_MIN_TVOS and LC_VERSION_MIN_WATCHOS commands are interpreted with the Mach-O CPU type, so Intel slices report simulator platforms while device CPU slices keep the device platform. A chained-import row ending in +0x... is ambiguous in dyld's text output: it may be an addend or part of a literal symbol name. REA keeps the full expression in raw_name, sets name and addend to null, and marks name_status: "ambiguous"; it does not synthesize a symbol identity. Each import and export name is the exact symbol-table spelling, such as _main; runtime_name is the derived name LLDB and dlsym use, such as main, and is null when name is null. See native call observation for breakpoint names.

Start with a function

Choose an installed provider from setup. For Ghidra:

rea inspect /absolute/path/to/program --provider ghidra --json
rea search /absolute/path/to/program entry --kind procedures --provider ghidra --json

Select an exact name or address from the returned inventory, then use it with rea function PATH PROCEDURE --provider ghidra --json for a function dossier, rea instructions for assembly, or rea decompile for pseudocode. Do not assume that every target names its entry function entry. MCP uses open_binary and focused tools such as list_procedures and analyze_function on the same session.

Question Section
Which instructions, calls, references, or types are present? Native primitives
How can I select a name beginning with a dash? CLI selectors
What static path connects these functions? Bounded traces
Which UI resources or dispatch metadata are present? Static inspection
What did the declared runtime scenario observe? Desktop or call observation
What can this provider and host establish? Provider boundaries

For large pseudocode, request procedure_pseudo_code with detail: "summary" on the first MCP call. It retains the complete observation and returns the original selection, text availability and length without the body. Use normalized_result.parent_evidence_id with inspect_analysis_view and view: {kind: "native", facet: "pseudocode", offset: 0, limit: 20000}; follow coverage.next_offset for later pages. Offsets and limits count UTF-16 code units, not lines or tokens. Pages reuse the same observation without repeating decompilation. Null and empty text remain distinct. Omitted or complete detail preserves full inline delivery. Summary delivery requires a retaining session and does not reduce the work or memory of decompilation.

Exact CLI selectors

function, instructions and decompile accept --procedure=<name-or-address>; xrefs accepts --address=<name-or-address>. search accepts --pattern=<text> and trace accepts --query=<text>. These alternatives preserve names and text that begin with a dash, including Objective-C names such as rea function ./app '--procedure=-[REAWidget delegate]' --provider hopper --format json. Use the equals form when the value resembles a CLI flag, for example rea trace ./app --query=--help --provider hopper --format json. The existing positional forms remain available. Missing selectors and conflicting positional/named values fail before analysis starts; identical selections agree.

Native instruction, call and type primitives

Ghidra supplies three exact-object operations:

Ghidra accepts hexadecimal addresses with or without a 0x prefix, in either letter case, and explicit address-space coordinates such as EXTERNAL:0x1. Results use canonical lowercase hexadecimal offsets. For a procedure identifier, an explicit 0x or address-space prefix selects an address; otherwise an exact database symbol name takes precedence over a bare hexadecimal address. Thus a function renamed to dead remains selectable by name. Use the names returned by the inventory, including their namespaces and any platform symbol prefix. Ghidra also accepts secondary symbols at a function entry, such as an imported _main label. A label inside a function is not a procedure-name selector; use its address when selecting the containing function. search_procedures matches the same names, in leaf or qualified spelling: the function appears once with its primary name as value, and matched_aliases lists the qualified names of the secondary symbols that matched. Overloads can share a fully qualified name; ambiguity errors return every matching entry address so the caller can select the intended function directly.

resolve_containing_procedure also resolves an exact external entry. Its empty body remains explicit; nearby external addresses do not inherit that identity.

Ghidra function references cover the complete function-body AddressSet and its exact entry, including references into instruction interiors and references from embedded data. Addresses inside an enclosing span but outside the owned body are excluded. procedure_references returns internal and external edges; analyze_function omits incoming edges whose sources belong to the same function. The reference collector's semantics participate in the analysis profile, so older snapshots cannot replay the former incomplete results under this profile.

Ghidra regex searches use Java Pattern semantics. If compiling or matching a pattern exhausts the engine's stack, REA returns a resource constraint and preserves the active database and annotations. Retry in literal mode or simplify the regex; successful literal searches retain complete matching strings. Cancelling an active request terminates the ephemeral database and discards its annotations. REA retains the selected target and imports the original artifact again on the next Ghidra query.

Opening the same target and profile again retains the live database, including annotations. It does not make those edits eligible for an immutable snapshot. Snapshot closes drain earlier provider requests before saving and keep later requests waiting until the save and close finish. A concurrent successful edit therefore rejects the snapshot save and leaves the edited session open. After metadata edits, snapshot saves and imports remain unavailable in that session. Use export_evidence_bundle to retain the observations, close without snapshot_path, and reopen the target before importing or saving a snapshot.

Hopper executable opens use an owned private image verified against the digest selected by open_binary. The ordinary ELF/PE path and configured loader overrides copy the whole source; default Mach-O opens retain their selected-image checks. A changed source fails before the launcher reads it. The bridge binds its Hopper document to that private loaded path, while Evidence retains the selected original artifact identity. Hopper database opens retain their separate database semantics. Real Hopper conformance for ordinary copies and loader overrides remains unverified by the source regression tests.

Ghidra checks its private import copy against the artifact digest selected by open_binary. If the source changes before that copy is acquired, the query reports artifact_changed with the selected path and both digests. Reopen the stable target to acquire its current identity. An already imported database continues to describe its captured bytes even if the original path is changed or removed; this identity failure does not mark the Ghidra installation unavailable. On Linux and macOS, an unreadable source reports access_denied; a removed or nonregular replacement reports artifact_changed. Source copying is cancellable and never replaces an existing private snapshot.

rea inspect-native-instruction <binary> <address> --provider ghidra
rea resolve-native-call-targets <binary> <call-site> --provider ghidra
rea inspect-native-data-type <binary> --type /MyStruct --provider ghidra
rea inspect-native-data-type <binary> --address <typed-data-address> --provider ghidra

Ghidra bit-field components may have a type_id that is not a registered database type. When bit_field is present, base_type_id is the provider's base type and the lookup fields report whether the manager resolves equivalent types at those exact paths. bit_size is the effective width; declared_bit_size can be larger. bit_offset is the least-significant-bit offset within the base type, not a byte-order-independent offset from the start of the containing structure. Account for the component's storage size and byte order before applying that offset to a larger word. Missing bit_field details are unreported, not proof that a component is not a bit-field.

Instruction facts include bytes, length, decoder text, ordered register/scalar/ address tokens, typed references and flow destinations. Mid-instruction, data, outside-memory and unlisted addresses have separate outcomes. For Ghidra, not-in-listing means the address is in memory without a listed instruction or defined data. REA does not attempt a decode there: the memory may be uninitialized or contain valid instructions. Older Evidence may report undecodable for this same ambiguous case; it does not establish that a decode failed. Effective memory base/index/displacement roles remain unavailable. Ghidra reports its program language variant in mode; other providers retain their own mode label. Ghidra MIPS results additionally expose decoder_context with the observed ISA_MODE register at the queried address and its provider source. A null value is unavailable, not mode zero; an empty array reports no available context register, and omission preserves older captures or providers that do not expose this facet. The context is an analysis observation, not proof of a runtime processor state.

inspect_native_instruction also returns incoming_references to the exact queried address, including data, interior-instruction and unlisted addresses. Ghidra enumerates its ReferenceManager, excludes synthetic entry-point references, and returns deterministic source-address ordering while retaining distinct operand references from the same source. [] means that enumeration found no references; omission or null means this facet is unavailable in an older capture or another provider. Empty static references do not prove that the address is unused at runtime. The existing references field still holds outgoing instruction references, and xrefs still returns bare source addresses. The Ghidra analysis profile versions this incoming-reference coverage. Reopen the target without an older snapshot and save a fresh snapshot to acquire it; the older snapshot's Evidence bundle remains readable with this facet unavailable.

Compact incoming, outgoing instruction and call-target references preserve the source address, operand index, DATA/READ/WRITE classification, primary status, provider provenance, and reference source (for Ghidra: analysis, default, imported or user_defined). Primary status reports the provider's chosen reference; it does not establish literal addressing. Analyzer-inferred indexed targets remain static references, not observed runtime reads or writes. Older evidence may omit the additive fields, and null or omitted facts mean unavailable rather than false.

Ghidra distinguishes a return using decoded instruction p-code's RETURN operation. flow.classification_evidence preserves the Listing flow type and the observed return evidence; mnemonic spelling alone is not the classifier. Other terminal or trap flows retain the provider's classification, and this inspection does not change function extents or prove a calling convention. The analysis profile commits this decoder behavior. Snapshots from the earlier profile produce a profile mismatch rather than replaying the former generic terminal result. The old snapshot's evidence_bundle remains valid retained Evidence: copy that object to a separate JSON file and use rea evidence-import to validate it. Run analysis without the old snapshot and save a fresh one under the current profile. Other providers and older captures may omit the classification evidence field.

Call resolution reports direct, resolved indirect, ambiguous, unresolved and non-call outcomes from static call references. It does not establish runtime execution or classify Objective-C/Swift/vtable/closure mechanisms from names.

batch_decompile keeps each caller-selected symbol or address in items[].address. The separate procedure field reports the canonical entry and the provider's observed entry label. An interior address therefore remains visible without being mistaken for the function entry. Identity failures are reported as procedure.status: "unknown"; label failures leave a null name and name_error. Neither failure discards usable pseudocode, and names are not parsed from it. A provider answer without pseudocode is an error item that keeps that observation's own limitations, so a reason the provider reported for that entry, such as a Kuna export failure or a missing body, stays with the item. Null pseudocode is capability_unavailable; empty or non-text pseudocode is unreadable_output. Provider failures keep their typed error. Successful items do not repeat limitations; the batch Evidence aggregates every observation's limitations by provider and operation. Resolved entries also appear in the composed Evidence locations. New batch Evidence commits the revised workflow profile; retained historical Evidence remains valid. This tool has no dedicated CLI command; the existing decompile command remains the single-procedure CLI operation.

detail: "summary" retains the complete batch and returns only its counts, identities and sizes. inspect_analysis_view then reads rows or one body from the retained record, an Evidence file or a portable bundle without repeating decompilation: see selected batch results.

Each batch schedules one provider read at a time, but has no shared input-count or aggregate retained-output allowance. It retains every requested row and full pseudocode body through Evidence construction. The MCP response budget checks complete delivery afterward; it does not bound provider work or retained batch state. Select small explicit batches when using this workflow. A general batch admission/output policy, including completed per-item facts when capacity is exhausted, remains unresolved.

decompile_all (rea decompile-all <target> --output <directory>) writes one pseudocode file per analyzed function and returns only a manifest: counts, the output directory, capped failure reasons, provider identity, and the analysis-profile digest. The manifest and decompile-index.json do not contain pseudocode. Each file records the provider name, canonical address, inclusive body ranges when procedure_info supplies them, and the procedure_info and pseudocode limitations for that function. Header values are abbreviated to 2,000 characters per value and the joined limitation line to 4,000 characters; the index retains the complete selected names, addresses, provider facts and caveats. Failure details retain at most 32 rows within 2,048 JSON-encoded UTF-8 bytes; names may be omitted to keep complete addresses and reasons. The index retains every failure and its complete observed name. The manifest reports the procedure-inventory limitations of the current call in inventory_limitations. decompile-index.json's latest_run records that call's filters, selected and excluded counts, and inventory limitations; older runs remain represented only by their retained function records, so a later inventory warning is not presented as the history of every file. Each function's decompile-index.json record, whatever its status, keeps the complete limitations of the observations it used. When available, provider_source records the source of that attempt's pseudocode observation: a file path, SHA-256 and byte range, or a single-function decompile. The latter describes the method, not a unique run. A file descriptor records the source as observed; the file may since have changed or been removed, so compare its current digest before using it. The descriptor does not authenticate the journal. status: "unknown" distinguishes an unavailable source from an existing matching output whose original producer is unknown. Older journal records can omit this field; omission is unknown. Failed attempts retain their source in the append-only journal when the provider supplied one, even if a later attempt succeeds. The returned Evidence keeps at most eight first-observed distinct per-function provider limitations within an 8,000-byte JSON-encoded UTF-8 text budget and counts omitted observations. Repeated omitted text is counted per observation, not as a distinct caveat. This summary does not retain every omitted string in memory. A fresh output directory must not already exist. --resume continues an export for the same target SHA-256, provider, analysis profile, and layout; it requires the directory to exist, and an export without a known target or profile digest cannot be resumed. Resume skips files whose bytes still match the last write the journal recorded, even after a later read failure, tries functions it has not attempted before retrying recorded failures, ignores a journal line torn by an interrupted write, and never overwrites a conflicting file. File reservations compare ASCII paths without case, so distinct address spaces remain distinct on case-insensitive filesystems. A resumed journal with conflicting reservations is refused. One function's decompiler error or deadline is counted and does not stop the others. A function that procedure_info classifies as external, such as an import, is counted as external and recorded with that status and the body fact as observed. It gets no file, no pseudocode is requested, and a resume skips it. A function whose classification is unknown is decompiled as usual; a provider that returns null pseudocode for it is reported as no_pseudocode. Inventory rows without an address are counted in the limitations. --layout dwarf reports that compilation-unit paths are unavailable and still names files by address. Filters are a case-sensitive name substring, a case-sensitive name prefix, an inclusive address range (including uppercase hexadecimal input), and a positive safe-integer attempt limit. The limit does not allocate space in proportion to its value. Cancellation leaves files already written in place. One run at a time holds an output directory, identified by its device and inode, through export finalization and any retained cleanup retry; another run on the same directory is refused with the holder's process ID, and a crashed run can be recovered by the next run. Failed descriptor or staging cleanup remains owned by the session; close the target to retry it. Initialization cleanup preserves unexpected entries rather than recursively removing the directory. Resume hashes existing files in bounded chunks, and index generation reuses committed journal facts already held by the export owner. After five consecutive functions whose files could not be written or read, for example on a full disk, the export stops with an error instead of decompiling the rest. Files and records already committed stay, decompile-index.json is still written, and a later resume continues.

Type inspection selects one exact database pathname or typed data address. Struct/union fields, enums, pointers, arrays, typedefs, size, alignment, packing and bitfields retain database authority. Child types use exact IDs for further inspection, including recursive layouts. Source/debug authority and flexible array semantics are not inferred. The real lane uses a native DWARF 4 object with a struct containing a union, enum and recursive pointer; a stripped linked binary may have no corresponding recovered layout.

Ghidra serializes at most 20,000 fields or enum members per inspected type. Check total_fields and truncated before treating the returned layout as complete. These fields describe omissions from the response, independently of whether Ghidra recovered the original source layout.

Hopper analysis behavior

Cursor navigation returns the observed object start when Hopper snaps an interior address; adjacent-object navigation rejects unmapped inputs and document ends. Native API text rejects NUL characters and unpaired Unicode surrogates before annotation changes. Renames preserve unselected label owners; use a batch with all affected addresses to move or swap existing labels explicitly. Every rename destination must be mapped, and native symbol names must fit Hopper's 1024 UTF-16 code-unit limit. Oversized names fail before any batch edits; bookmarks and literal string results are not subject to that symbol-name limit. Rename success requires exact final readback. New bookmarks must point into mapped memory; existing legacy bookmarks outside it can still be removed. String results read each native typed object's complete bytes, retain the original provider display in provider_value, and report its encoding, byte length, and termination. encoding_status: inferred distinguishes REA's decoding from an observed source encoding. Hopper can split long literals into adjacent unterminated objects; search matches each object's decoded bytes independently. Undecodable objects retain native display text with decoding.available: false and a reason, so one uncertain object does not block unrelated inspections. Function dossiers and trace_feature string matches retain this same string evidence, including decoding uncertainty; procedure matches keep their own named observation fields without invented string qualifications. Tracing keeps same-address search alternatives, including different string encodings, in their original search order and shares one reference read per target address within the call. Reference rows are emitted once per target address, preserving any duplicates in the provider's observation. Native call edges retain Hopper's partial CallReference classification and exact endpoints; detailed reference flags remain unavailable rather than being invented. Caller and callee procedure inventories come from independent Hopper APIs; REA retains observed relationships but reports their completeness as unknown. In particular, a resolved tail call observed in one direction does not prove that the reverse inventory is complete. An empty Hopper inventory cannot establish that no such call exists. No whole-binary reverse scan is performed.

For large native traces, trace_feature accepts detail: "summary". It retains the complete trace and returns counts and its parent Evidence ID. Use inspect_analysis_view with that ID and view: {kind: "native-feature-trace", collection: "references", offset: 0, limit: 64} to page the original rows; matches and unknowns are separate collections. Matches accept an exact address; references accept exact source_address and target_address filters. Row indices refer to the retained collection, and page coverage does not establish provider discovery completeness. list_unknowns pages the independently managed question heads. In the one-shot CLI, rea trace ... --detail summary --evidence_output PATH stores the trace and its linked source Evidence for later inspect-analysis-view calls. This bundle does not include the CLI session's Unknown registry; its original question texts remain available in the trace's unknowns pages. Regex searches use ECMAScript Unicode syntax in a cancellable worker with a matching deadline and a worker old-generation heap. Deadline or cancellation stops matching while leaving the Hopper API available. The deadline is REA_REGEX_MATCHING_DEADLINE_MS, a positive decimal integer from 1 to 2147483647 ms. Unset uses 5000 ms. A larger value is refused because Node schedules a delay past that signed 32-bit bound as 1 ms. Invalid values are configuration errors and do not fall back to the default. The setting is read from the environment that starts REA; changing that environment needs a restart. In MCP, regex.matching_deadline_ms overrides the deadline for newly accepted searches without restarting REA. A deadline failure names the effective milliseconds, known source, default, and maximum. The worker old-generation heap does not raise it. IDA and Kuna use these same regex controls; Ghidra's Java matcher does not. The worker heap request is REA_REGEX_WORKER_HEAP_REQUEST_MIB, a decimal integer from 7 to 16384 MiB. Unset uses 128 MiB. A request below 7 MiB aborts the worker during startup, and a larger value is refused. Invalid values are configuration errors and do not fall back to 128. The setting is read from the environment that starts REA, while MCP regex.worker_heap_request_mib can override it for workers belonging to newly accepted searches. Use update_analysis_settings for either runtime control; accepted work keeps its budget. See the settings design. A heap failure names the effective request, known source, default, floor, and maximum. A positive Node.js --max-old-space-size on the process that starts REA, including NODE_OPTIONS, overrides that request and sets the effective heap. --max-old-space-size-percentage takes precedence over that flag in either order. REA does not turn the percentage into a MiB, so the effective heap stays unestablished instead of the worker heap request or the absolute flag. The reported NODE_OPTIONS value is the process initial environment when that block can be read. A later edit to the environment is not the value Node applied, and an unreadable initial value leaves the effective heap unestablished. The launch Node options are the initial command line on Linux when that buffer still has a program entry, not a later edit to process.execArgv. A preload can clear that array after V8 has applied the flags. Setting process.title or --title overwrites the command line, so a buffer without a program entry leaves the effective heap unestablished. --env-file or --env-file-if-exists can supply NODE_OPTIONS when the initial environment has none. That file is not part of the initial environment block, so the effective heap stays unestablished instead of the worker heap request. An initial NODE_OPTIONS is still used, because Node does not let the file replace it. A positive --max-heap-size, including the underscore form and launch NODE_OPTIONS on Node versions that allow it, sets the total heap rather than the old generation and can be lower than the worker heap request. The effective old generation stays unestablished while that value is in effect. A zero or empty value clears it. --experimental-config-file or --experimental-default-config-file can set nodeOptions, including a heap percentage, from a file that is not read back. The effective heap stays unestablished when either flag is present, including when an absolute --max-old-space-size is also on the command line or in the recovered NODE_OPTIONS. Node accepts the config path as = or the next argument. Literal mode retains Python Unicode full case folding, which can expand a character into a sequence: for example, ss matches ß. This differs from REA's Unicode simple case folding used by other native search providers and Hopper regex mode.

Bounded static traces

Hopper caller queries, incoming procedure references and function dossiers reconcile reported reverse relationships with forward call observations. Each standalone query or composed workflow scans the current document in pages of at most 64 procedures and retains at most 4 MiB of encoded scan results. A composed workflow reuses its own index and clears it when the workflow finishes. The default cooperative scan budget is 2,000 ms; set REA_HOPPER_CALLER_SCAN_BUDGET_MS to a positive integer number of milliseconds before starting REA to change it. The default limits additional work on the serial Hopper bridge; larger documents may need a higher setting. Results report the examined procedure count and any budget interruption. An individual page, native caller list, and target instruction list each have a 512 KiB encoded allowance. Hitting one reports the incomplete observation. Cancellation is checked between pages, but cannot interrupt a Hopper API call already executing; Hopper's native API itself materializes its reference arrays before REA can bound their copies. Hopper exposes no document revision token, so scans are not reused across workflows and coverage and consistency during a live scan remain unknown even when every procedure was examined. Hopper observations are re-observed rather than replayed from snapshots because the provider has no document revision token. Safe observations may still be retained as Evidence.

trace_native_ui_action / rea trace-native-ui-action <target> <seed> accepts one authored selector/object ID, native symbol or exact function address. It joins UI wiring to uniquely matched class/selector implementations and follows bounded typed call references. Direct references, resolved indirect references, ambiguous candidates, inferred untyped provider callees and targetless call sites remain distinct. A static route does not establish runtime reachability. Swift/closure dispatch requires resolved static references; unavailable ABI forms remain unknown.

Encoded Objective-C method records retain their own locations in dispatch Evidence. A handler node uses the implementation address with an unknown file offset unless that function already has an independently located graph node; the method-record offset does not locate the handler's code.

Incomplete reference kinds do not discard known typed calls or partial provider call references. A provider_call with observed resolution retains the provider-reported call site and endpoint without claiming generic direct, indirect or Objective-C dispatch semantics. Its call_reference evidence preserves the original endpoints, classification, raw provider type and provenance, even when the target node is a containing procedure. Hopper's none, unknown, direct and objective_c labels stay provider-scoped; unknown numeric types remain available in the raw type field. Target-only callee fallback uses provider_call with inferred resolution.

Callee fallback adds inferred targets while each retained route keeps its original provider and call site. If enumeration fails, known routes remain alongside an unresolved failure; cancellation still terminates the request. A node-limit omission keeps the route's known relation while marking its target unresolved. Distinct call sites to the same omitted target retain separate evidence. Reports sharing a call site and containing target procedure retain all their original endpoint evidence on the shared graph edge. Different reported relations retain separate edges, independent of enumeration order.

Session discovery describes two automatic source routes for this trace: authored_ui_dispatch needs Interface Builder decoding and dispatch metadata; native_seed_call_trace needs native address resolution, dispatch metadata and a call reader. Metadata can come from direct inspection or list_names; the call reader can supply typed procedure_references or inferred procedure_callees. An authored UI-to-handler edge remains useful without call expansion, and native-seed tracing can proceed without UI decoding. These routes add no request option or default mode, so discovery omits default_mode_available. Availability describes source prerequisites; the result reports the query's actual matches, coverage and failures.

trace_native_values / rea trace-native-values <binary> <procedure> --provider ghidra composes high-p-code def-use graphs across statically resolved calls. Logical CALL arguments bind to recovered parameter ordinals; recovered RETURN values bind to CALL outputs. These edges are decompiler-derived. Constants, operators, LOAD/STORE and branch operands are included inline. Alias effects, persistent state, RNG roles, missing/variadic bindings and ambiguous destinations remain unknown. Budgets control depth, decompilations, call-site resolutions, nodes and edges. Node payloads are bounded to 8 MiB and serialized results to 32 MiB. Pagination returns edges whose source is on the node page and preserves stable IDs for endpoints outside that page.

Procedure, node and edge evidence_id values identify the source function observations used by the trace. In an MCP session, retrieve them from the Evidence bundle for inspection or export. A replayed source keeps the original observation's identity; the trace also reports that replay occurred. Older cached value traces are not replayed under the revised workflow profile, while their historical Evidence remains available.

The one-shot CLI accepts --evidence_output <new-path> to save the trace and the transitive source Evidence closure named by its links. The destination is never overwritten. --detail summary requires --evidence_output; the bundle still retains the complete trace and source Evidence.

Within one value trace, each exact procedure selector is attempted at most once, including failed analyses. A failed seed returns the provider's original typed failure and corrective guidance; it cannot establish a trace or target identity. Failures while expanding a validated seed remain unknown observations and do not establish canonical function identity. A cancelled expansion read returns the cancellation. An expansion read whose provider cannot confirm cleanup of resources it owns stops the trace: the result is that provider's own cleanup_incomplete failure with its resources and any bound cleanup retry, and the work admitted before the stop is retained as partial Evidence with a located unknown at the stopping read. A successful seed without a native def-use model still returns its procedure and an explicit coverage unknown. An unrecorded facet stays unknown; when the provider explicitly reports unavailability, the trace retains its reason. REA's Kuna provider explicitly reports that it does not supply native def-use observations. A new trace can retry failed selectors.

Paging and traversal completeness are separate facts. page_truncated means the page omits retained nodes, and the edges they source, before offset or after next_offset. Every page repeats traversal: complete, or truncated with reasons naming each observed cause: the max_depth, max_functions, max_call_sites, max_nodes or max_edges budget, the fixed node_payload_bytes allowance, provider_pcode_truncated, ambiguous_call_candidates, or, only in a stopped trace's partial Evidence, cleanup_incomplete. Each cause also has a located unknown. A budget is reported only after it rejects work, so an exactly filled budget is not truncation; a depth or candidate limit is reported only when no other path analyzes or queues that destination. total_nodes and total_edges count retained rows. truncated remains true for either kind of omission. Failed analyses and unresolved calls stay in unknowns and do not truncate the traversal. Each page reruns analysis; pages are not pinned to one snapshot across session edits.

The raw Java is_dead flag can remain set after Ghidra decodes a live block; block_membership reports actual syntax-tree membership separately.

The provider dossier itself retains up to 3,000 p-code operations, 64 inputs per operation and 12,000 def-use edges, with explicit omitted counts. A STORE may describe stack memory and does not itself prove persistent state.

Jump-table evidence keeps numeric mappings, explicit default_targets, and backing data_sources separate. A null case value denotes an unresolved case, never a known default. Ghidra pairs typed case/default tokens with the recovered block entry and its unique indirect dispatch predecessor; it does not zip unequal label and destination arrays. Shared case bodies retain each label. Negative numeric tokens are checked against their encoded magnitude; nonliteral, ambiguous, or nonexact JSON integer labels remain unknown. Unknown-label diagnostics retain the token text, encoded unsigned magnitude, target and dispatch so callers can inspect the original observations. Decompiler load-table metadata supplies observed entry sizes and counts without assigning every backing table to each mapping. These observations describe the decompiler's recovered switch, not guaranteed original source. Legacy records without default_targets normalize to an empty array and retain their existing unresolved mappings.

AArch64 jump-table recovery additionally verifies byte and halfword relative forms from unsigned bounds, register definitions, table loads, branch bases, scaled ADD/BR instructions and the recovered target set. It reads exactly the proven count and preserves unknowns for other forms. Real ELF and host ARM64 Mach-O fixtures check each case against source-owned return values.

Static inspection

Thin Mach-O admission and each admitted FAT slice walk declared load-command headers, checking width-specific alignment, command sizes and exact ncmds/sizeofcmds agreement before opening a provider. Headers beyond the initial probe use another 4096-byte window; admission skips command payloads. Native image readers use the same framing owner and perform their own payload checks. This validation does not add a global command-table byte cap.

Native target admission checks Mach-O slice headers before assigning FAT identity. A shared CAFEBABE prefix whose declarations do not identify Mach-O images receives the generic unsupported-format refusal, including JVM class files larger than the bounded admission probe. This does not identify a partial prefix as a validated JVM class. For files sharing CAFEBABE, target admission checks complete JVM framing within the same 16 MiB class identity bound as the Mach-O image reader. A complete class remains unsupported even if its constant pool resembles a known FAT CPU declaration. Above that bound, an ambiguous malformed FAT interpretation remains unresolved. Malformed recognized FAT declarations retain their format-specific reasons.

inspect_artifact and extract_artifact retain universal Mach-O slices under their exact lipo names, including 32-bit ARM implementations such as armv7, armv7s, and armv7k. These names are reconciled with the FAT CPU subtype; the structural reader's arm family label alone does not identify a slice. Available CPU type, subtype/capability bits, byte range, and alignment remain checked against the source bytes. Inventory records source ranges and hashes, and extraction copies those ranges without running the target. This does not expand any analysis provider's supported architectures. Malformed successful lipo output reports a format failure with its parse diagnostic. Apple lipo's hidden ARM64 compatibility row is retained separately from the raw nfat_arch count and admitted only from its extra FAT table slot when its in-range Mach-O header matches the row. list_architectures preserves the per-row hidden marker from lipo output. Mach-O image and Electron fuse inspection include the row in architecture selection while retaining that marker in their reported slices.

inspect_plist.format describes the selected source, not plutil's conversion format. Sources explicitly identified as XML, binary or JSON retain those labels. For generic text, a bounded source-prefix probe recognizes leading XML markup, including UTF-8 and BOM-marked UTF-16 sources. Unidentified text and OpenStep plists, including a data-only value such as <deadbeef>, report unknown even when plutil decodes their values through an XML conversion.

Plist inspection reads bounded original bytes through an owned file descriptor. Binary and UTF-8/BOM-marked UTF-16 XML sources decode directly, retaining scalar facts without a mandatory plutil conversion. UTF-8 JSON containers also decode directly when their number facts need no further classification; explicitly identified JSON sources can have scalar roots. Unidentified primitive text keeps its existing conversion route, so OpenStep 123 remains a string. OpenStep, unsupported XML encodings such as UTF-32 and declared legacy encodings, and JSON numbers requiring XML type facts retain the plutil route. Invalid UTF-8 and encoding-declaration mismatches remain explicit failures. Direct-source provenance records file without claiming conversion; conversion limitations and invocations appear only when conversion actually ran. XML sources must also pass native format validation, with native refusals retaining their diagnostics and successful validation recorded in provenance. Original unknown scalar text, reasons and limitations survive successful validation; output-budget omissions remain omissions.

Source input is limited to 64 MiB. Binary and direct XML decoding reserve an estimated 64 MiB decode budget before parsing; this is not a hard process-memory bound. The XML estimate charges every element and every text, comment or CDATA node of the decoder's DOM at a measured upper bound, so a plist made of many small elements reaches it at a few MiB of source. JSON decode memory has not been measured and has no equivalent decode estimate. A refused input reports non-retryable resource_constraint with reported_limits.maximum_input_bytes or maximum_decoded_bytes as applicable. Ordinary direct-source decoding has a ceiling of 998 source nesting levels, derived from the existing 1000-level JSON result capacity by reserving one level for typed scalar fields and one for the result's value field. Deeper input reports resource_constraint with reported_limits.maximum_nesting_depth: 998 and names the fixed nesting allowance. XML admission also requires native validation, which can refuse input below this decoding ceiling. Compatibility conversions can likewise encounter an earlier native utility refusal; both retain native diagnostics. Archive and Interface Builder decoding retain their separate 128-level allowance. Worker limits and host memory do not raise these fixed allowances, and the unchanged request fails the same way.

A plist explicitly selected through the path input or as the active plist target reports an unreadable or malformed selection as invalid_request. A missing or unreadable default plist of another target reports capability_unavailable. Permission failures remain access_denied; output and cleanup failures retain their own error categories.

Selected plist paths preserve filesystem resolution, including .. after a directory symlink and trailing directory separators. Resource-only bundle sessions resolve relative selections from the bundle root with the same path semantics as executable sessions; the reported source path retains those selected segments.

A conversion refusal includes plutil's diagnostic from either output stream. details.captured_output retains bounded stdout/stderr excerpts, observed byte totals and exit status. truncated: true means those excerpts are incomplete.

A dSYM companion that dyld_info refuses for an unbacked text section reports unsupported_target, retaining the exact diagnostic and directing inspection to the linked Mach-O. This classification requires both the recognized native refusal and an independently parsed dSYM Mach header; other tool failures keep their failure outcome.

Observed dyld_info diagnostics include unknown mh.filetype 4 and unknown filetype 4 for MH_CORE, and the corresponding 3 spellings for MH_FVMLIB. These refusals report unsupported_target when the independently parsed Mach header confirms the reported file type. The error retains the exact native diagnostic and recommends a linked Mach-O executable or relocatable object. This classifies the selected target's refusal; it does not establish support for core-dump analysis, historical FVMLIB layouts, or unobserved native diagnostic spellings. Unknown or contradictory header values and signalled commands remain failures.

inspect_macho reads load-command framing and fields from the selected Mach-O bytes. It does not use line-delimited tool output to decide where a command, section, or embedded string begins. Names whose bytes are not valid UTF-8 have a null text value and retain their original bytes as lowercase hexadecimal in name_bytes_hex, segment_bytes_hex, or path_bytes_hex; fixed-width names stop at the first NUL, and command paths exclude their NUL terminator. Older retained Evidence may omit the byte fields. Large binary sizes and offsets that cannot be represented as safe JSON integers retain an exact hexadecimal field; the corresponding numeric field is null. A section alignment too large to represent in bytes retains alignment_exponent instead.

Unknown or partially decoded commands retain their selected-slice-relative offset and size. Their unexamined fields are described in load-command coverage limitations; an exhaustive command inventory does not by itself establish that every payload field was decoded. inspect_macho.selected_architecture identifies the exact selected lipo slice and its container_file_offset in the input file. A thin Mach-O has a known offset of zero; an unknown universal-slice offset stays null. The Evidence subject format describes the input container: mach-o-universal for FAT files, including those with one slice. The normalized result also reports the container in format; selected_architecture identifies the selected Mach-O image. Architecture file_offset values are container-relative. Entrypoint, segment and section file_offset values retain their source meaning and are relative to the selected Mach-O slice. Decoded load-command fields retain their original values. Repeated fields, such as each LC_BUILD_VERSION tool, are keyed name #n in order. Each decoded LC_LINKER_OPTION string is keyed string #n and checked against the declared count. Evidence locations map the LC_MAIN entrypoint and nonempty file-backed segment ranges to container offsets by adding the observed slice offset. Zero-fill segments do not produce file ranges. When the selected slice's container offset is unknown, those mapped locations are omitted with an explicit limitation; architecture inventory locations remain available.

inspect_macho.encryption reports the LC_ENCRYPTION_INFO(_64) state of every slice, not only the selected one. It decodes only the FAT table, slice headers and load commands. Like every Mach-O container read, a 0xcafebabe input of at most 16 MiB is first read whole to rule out a JVM class file, so that read includes code bytes; larger inputs and thin images read only the structures above. A slice is encrypted when its single encryption command has a nonzero cryptid, not-encrypted when cryptid is zero, and absent only when every load command was read and none was an encryption command. A command whose width or cmdsize contradicts the image, more than one such command, or a range past the slice is malformed; a slice whose commands could not be fully read is malformed or unknown with a reason, keeping any commands seen before the failure. A slice with more than two encryption commands keeps the first two and states the count in its reason. Range mapping in all slices shares one budget of segment and section records (16,384, a sixteenth of the native output budget); a slice past it keeps its status and reports its mapping as unknown with that reason. Framing caps retained segment commands before decoding. Only a successful mapping consumes the shared allowance; failed mappings leave it available to later slices. Each slice's range is end-exclusive in slice and input-file coordinates and maps to file-backed segment fragments, VM addresses and the overlapping nonempty sections; bytes outside every segment remain unmapped fragments. A segment with no VM size keeps its file bytes as fragments with null VM addresses, and a segment whose file size exceeds its VM size or whose VM range leaves the address space makes the mapping unknown with a reason while the slice keeps its encryption status. architecture is the lipo name of the record at the same offset, size and CPU identity, and is null when no single record matches. A ciphertext range adds a limitation naming its input-file bytes, because disassembly, decompilation, strings and references derived from them do not describe program code. Encryption is read through the same regular-file descriptor that inspect_macho binds for its load-command reads, whose SHA-256 must match the session target before and after the native tools run, or the call reports artifact_changed. A target that cannot be opened, or a symlinked, non-regular or changing target, fails the call instead of reporting tool facts without an encryption status.

Hopper's address_to_file_offset combines the native image-relative mapping with original-file coordinates only after checking the source against the session's SHA-256. FAT tables and embedded Mach-O headers come from that same hashing pass. A changed or nonregular source reports artifact_changed; an unreadable or missing source reports its access or filesystem failure. Those errors retain the native offset, loaded header and provider source path in details.partial_observation, with the original-file coordinate explicitly unavailable. Restore the original bytes or reopen the changed executable to obtain verified coordinates. Snapshot replay remains historical evidence for its recorded artifact identity.

A selected Hopper database's digest identifies the database rather than its original executable. Original-file mapping is unavailable for that selection; native mapping facts remain in partial evidence, and read_bytes still reads the loaded database. Open the original executable to verify source coordinates.

Native Xcode command execution uses shared process supervision with a 60-second deadline and a 64 MiB aggregate stdout/stderr budget. Timeout, cancellation, stream failure, and output exhaustion retain the captured output, exit details, and cleanup outcome in the error result. Truncated output is never parsed as a complete observation.

  • trace_dylib_resolution / rea trace-dylib-resolution <app-or-mach-o> parses Mach-O load commands in TypeScript and follows dyld's path expansion for every executable in an app bundle, or for one Mach-O within its directory. It reports each @rpath, @loader_path and @executable_path candidate with its outcome. Paths outside the analyzed root, including shared-cache system libraries, stay undetermined. See Apple application analysis. ARM64 slice labels distinguish arm64v8, arm64e, and arm64e.x1 while retaining raw CPU subtype and capability bits. The arm64 and arm64e request filters select their respective families; a shared family label does not establish dependency compatibility across different subtypes. Executable-root discovery preserves traversal uncertainty, including undecodable filenames and skipped symlinks, as partial coverage. Known executable roots remain available; unexamined names and symlink targets cannot establish an empty root set or the absence of other roots. A dependency symlink whose target is not valid UTF-8 is undetermined, with its stored target bytes in the limitation and partial coverage; a selected root crossing such a symlink is refused with the same bytes in its diagnostic.

  • inspect_asset_catalog / rea inspect-asset-catalog <app> reads compiled Assets.car metadata through macOS assetutil --info. Catalog digests, raw rendition fields, pagination and exact UI resource-name matches are returned. inventory_coverage describes traversal of source entries and remains unknown when the reader cannot represent a filename. Represented symlinks are inventoried but their targets remain uninspected, with a limitation. catalog_coverage and resource_key_coverage separately describe examined catalog metadata and the UI join; an unmatched key cannot establish absence when either source is incomplete. Resource wrappers retain their serialized class and authored runtime class, including AppKit NSCustomResource names. Invalid producer JSON and subprocess failures retain captured output with their typed failure reason and selected catalog path. A complete normal assetutil exit declaring that exact catalog path is not a valid AssetCatalog, or its observed Undefined error: 0 / invalid file rejection, reports an invalid-artifact failure. Other tool failures retain their own classification; unrecognized diagnostics do not establish malformed bytes. Catalog-reader cleanup retains the primary integrity, utility or cancellation failure and its cleanup resources; the provider retains catalog, Interface Builder and keyed-archive readers until cleanup is confirmed. A catalog failure also retains cleanup failures from its parallel Interface Builder join. Image extraction and undocumented rendition interpretation are unsupported.

  • inspect_keyed_archive / rea inspect-keyed-archive <plist> reads XML or binary Foundation keyed archives without instantiating classes. For an active app, provide its relative archive path as the second CLI argument or MCP path. Results retain original $objects indices, named $top roots, shared/cyclic references, class descriptors, raw serialized fields and malformed/unresolved/nil references. Missing fields stay absent; unknown classes are preserved. Select root, offset and limit explicitly. Binary references retain their serialized type-8 UID identity; ordinary dictionaries with UID or CF$UID keys remain authored data. XML uses Foundation's single numeric CF$UID dictionary convention for references; a numeric UID dictionary remains authored data. Reference identity follows the parsed format, rather than the displayed key alone. Object kind describes the decoded archive value: data, dates and numbers remain scalar when their JSON value uses a $plist_type wrapper. An actual dictionary with the same fields remains dictionary. XML must be well-formed. Data literals use CoreFoundation's raw ASCII quartet rules: non-alphabet ASCII characters are ignored and an incomplete final quartet emits no bytes. Character references retain their source spelling for data decoding. Non-ASCII content, child markup and self-closing <data/> are format failures; explicit <data></data> represents empty data. Each XML dictionary key must have a following value element; a final key without one is malformed. An explicit empty string remains a value. Binary UID payloads may use nonminimal byte widths. REA normalizes them only in a private decoder copy; archive digests still identify the original bytes. Positive binary-plist offset and object-reference table widths are read from the source; nonstandard widths are normalized only in that private copy for the pinned decoder. Foundation's table checks accept positive widths subject to extent/reference bounds, and its sized-integer reader handles non-power sizes. Widths over eight bytes follow its unsigned 64-bit accumulator semantics. UID values above JavaScript's exact integer range return an unsupported-target outcome instead of rounded reference identities. UID 0 cannot distinguish conditional nil from ordinary nil. Limits are 64 MiB of input, 200,000 objects/references and 128 nesting levels. XML, OpenStep and binary dictionary entries retain their source keys, including __proto__, through archive projection and CLI/MCP results. XML key names combine their text and CDATA segments without trimming or expanding literal CDATA entities. The original archive digest is preserved. Symbol fallback accepts complete Objective-C class/metaclass symbol leaves, including qualified names. Pointer/string labels that merely contain a class marker do not establish classes. Provider namespace method labels are not interpreted as Objective-C declarations; class definition versus import origin remains unsupported coverage rather than an inferred classification.

  • decode_interface_builder / rea decode-interface-builder <app> reads compiled storyboard and nib resources into objects, outlets, actions, connections and controller/class names. A full app graph is often several megabytes (XLD.app: 6.7 MB, about 2M tokens, which also exceeds the default MCP response budget), so MCP callers should pass detail: "summary". The summary keeps every decoded document and node/edge/coverage counts and retains the complete Evidence; page rows with inspect_analysis_view view: {kind: "interface-builder", collection: "nodes", document: "Contents/Resources/Base.lproj/MainMenu.nib", offset: 0, limit: 64}. document selects rows whose evidence names that exact documents[].relative_path (nodes and edges only); source_truncated keeps graph incompleteness visible on every page. verify:interface-builder compiles a source-owned AppKit XIB with ibtool. Storyboards require an installed iOS platform; unsupported archive forms remain explicit. XML plist archives accept UTF-8 and BOM-marked UTF-16 in either byte order. App bundle Info.plist executable resolution uses the same decoder as keyed archives and Interface Builder. The decoder consumes an initial BOM and rejects malformed byte sequences, unsupported encoding declarations, and declarations that disagree with the detected encoding. It never substitutes UTF-8 for a declared encoding it cannot process. Archive and evidence digests still identify the original serialized bytes. Bundle resolution reports malformed bytes and unsupported encodings against the original plist path before looking up the executable. Interface Builder decoding accepts recognized NSKeyedArchiver or ibtool document structures and native NIBArchive records; an ordinary plist renamed .nib remains undecoded with partial archive_decode coverage. An explicitly empty ibtool object document remains a recognized empty document. The decoder limits aggregate input archives to 32 MiB. Before decoding, it also bounds the serialized structure: expanded binary plist references, NIB table records, XML elements and text, plus their projected representations must fit the 256 MiB aggregate decode budget. NIB string values, data, property names and class names are charged at each projected JSON occurrence, including when the archive reuses one source value. Binary plist data projection also accounts for the temporary byte copy made by the pinned decoder projection. These are format-derived representation reservations, not exact heap measurements or a process-wide heap ceiling. Archives beyond either aggregate budget are omitted with their paths and an explicitly partial archive_decode facet; previously decoded documents and their identities remain available. The same facet is partial when source traversal cannot represent a filename or an archive-shaped symlink was skipped. Unknown filename coverage has no invented document count; known skipped nib and storyboard links are counted as omitted. A readable empty bundle can report complete zero-document coverage. Source I/O and identity failures retain their acquisition error instead of being labeled invalid archive content. Rejected plist decodes release their representation reservation for later documents. Repeated NIBArchive fields retain all serialized values in order. Array outlet connections resolve each serialized member and retain the collection object ID and member position on the outlet observation. NIB hierarchy uses recognized child fields, reverse NSSuperview links and window content links. AppKit registry pairs with a resolvable NSRoot owner establish top-level membership; other registry associations alone do not establish visual parentage and leave hierarchy coverage partial. Known non-view cell ownership and control-view backreferences remain raw facts. Conflicting explicit parents remain unknown rather than choosing an archive-order winner. Retained objects keep their decoded fields; uncertain registry diagnostics retain the source registry, child and value IDs. Missing, malformed or repeated registry declarations also qualify hierarchy coverage. NSString objects with the recognized NS.bytes representation are decoded as UTF-8 without substituting malformed bytes. A failed conversion retains the source string object ID and nibValues.NS.bytes base64 data; dependent authored classes, titles and selectors remain unknown, and object, class, connection and archive-decode coverage is partial. Other decoded objects and connections remain available. Genuine U+FFFD and leading U+FEFF characters in valid UTF-8 retain their identity; opaque data fields are not interpreted as strings. This does not establish support for other NSString representations. Embedded UINib archive data remains retained and undecoded; affected object, connection, class and hierarchy coverage is partial. Recognized UIStoryboardShowSegueTemplate source records similarly qualify connection coverage until their navigation semantics are decoded.

  • inspect_native_dispatch_metadata / rea inspect-native-dispatch-metadata <app-or-binary> prefers a validated macOS Mach-O byte reader. It decodes 64-bit little-endian Objective-C class/metaclass records, superclass pointers, absolute/relative method entries, ivar offsets/sizes/alignment and protocol declarations. It also decodes Swift nominal type declarations, simple Swift conformances, static synchronous witness slots, signed-relative pointers and non-generic, non-resilient class vtable descriptors. Records include exact virtual addresses/file offsets and artifact evidence. Vtable indexes are metadata word offsets; witness indexes start after the conformance header. Names unavailable in metadata remain null. The selected Mach-O header must match the requested CPU family for both thin files and universal slices before metadata decoding. CPU subtypes and capability bits remain source facts; an arm64 request may select an arm64e image under the existing slice preference policy. Objective-C class, protocol and category lists require eight-byte entries; Swift type and conformance sections require four-byte entries. Misaligned section lengths and unsupported non-PowerPC big-endian CPU declarations return unsupported_target with the selected path and precise reason. Recovery selects a well-formed or supported artifact and reopens that target. The byte reader holds the whole selected file in memory, so it admits files up to 64 MiB / 67108864 bytes by default. Select a larger budget with max_input_bytes (CLI --max-input-bytes), at most 1 GiB / 1073741824 bytes. The whole file counts, including every slice of a universal Mach-O. Results record input_admission with the effective budget, its source (default or caller) and the bytes retained. A refusal names the observed file size, the effective budget and its source, and either the budget to select or, above 1 GiB, a deep analysis provider. swift_decls lists each __swift5_types nominal type descriptor, which survives stripping: kind (class, struct, enum, or actor from the class actor flag), the descriptor's own name, module, qualified_name (Outer.Inner), generic, the metadata accessor_address, the descriptor location, and evidence citing its __swift5_types record. Private and local types set anonymous_context because their anonymous context is omitted from qualified_name. When a parent context cannot be resolved, such as an extension of a type named only by a mangled name, a missing module, or a cyclic chain, qualified_name is null and the entry is partial with a reason. Access level, superclass, conformances, and fields are not reported by this facet. The swift_declarations coverage counters count examined type records and fully decoded declarations. Class vtable recovery reads the same descriptors, so an unreadable type record also keeps swift_class_vtable_descriptors partial. Nominal declarations, conformance type and protocol references, and class vtables share one snapshot-scoped name/context reader. Conformance type_name, protocol_name, and dispatch owner retain enclosing named types; conformances carry the known module. Unresolved parents preserve the leaf name and a partial identity reason, while independently readable witness implementations remain available. Protocol instance properties use the same property-list reader as classes. Unreadable instance properties and unimplemented class-property lists keep the protocol's methods and record with partial protocol coverage. The swift_class_vtable_descriptors coverage counters count examined vtable slots and successfully decoded slots, rather than type-section entries. The objc_class_method_ivar_metadata counters count admitted class and metaclass objects and successfully decoded objects. Pointers are decoded through the image's fixups:

    • LC_DYLD_CHAINED_FIXUPS rebases and binds, including the authenticated arm64e formats;
    • legacy LC_DYLD_INFO rebase and bind opcodes.

    dyld symbol names are byte strings, compared with strcmp. Dependent library install names likewise originate as load-command byte strings and are compared byte for byte. When a symbol or applicable library name has no lossless UTF-8 text projection, the affected binding remains unresolved and pointer-fixup coverage is partial; later readable bindings and other metadata survive. The internal fixup reader retains the exact name bytes and parsed binding fields, while public Objective-C and Swift results retain the unresolved reason instead of publishing a guessed symbol, library or class name. A literal U+FFFD or leading BOM in valid UTF-8 remains part of the name. Legacy weak-bind lookup has no library-name scope, so an opaque dependency name does not prevent decoding an otherwise readable weak binding.

    A Swift conformance whose type or protocol reference is an external bind keeps its name as null and carries the raw dyld identity in type_binding or protocol_binding; that record and its facet coverage are partial. Consumers of this output must handle nullable conformance names and use the typed binding fields instead of substituting a symbol as a display name. Indirect relative-pointer records also retain their binding identity. A decoded rebase to virtual address zero remains an address; only an unfixed zero in a nullable ABI field is treated as null. Incomplete or conflicting fixup streams keep affected pointers unresolved; coverage reports parsing and resource limits while retaining validated prefix facts. Conformance records preserve the raw three-bit type_reference_kind. Kinds 0 and 1 identify direct and indirect nominal descriptors; kind 2 preserves the inline Objective-C class name and its source location. Kind 3 preserves an imported class binding or the local class-object address when available, but class metadata/name recovery requiring the Objective-C runtime remains partial. Unknown kinds retain the raw kind and reference location without being treated as absent or assigned a guessed type name.

    So an external superclass resolves from its _OBJC_CLASS_$_ bind (for example NSObject). The pointer_fixups coverage facet names the mechanism. Class properties preserve each encoded attribute as a raw {name, value} pair, including commas inside C++ template arguments in the T type, for example { name: "N", value: "" }, and report atomicity on the property: N means nonatomic; a complete typed attribute string without N means the Objective-C default atomic; missing or incomplete attribute metadata leaves atomicity and any unestablished read-only value null. A type attribute whose quoted class name never closes is incomplete and marks objc_properties_categories partial with property_attributes_incomplete. A property record that cannot be decoded, such as one with an empty or unmapped name, is reported as property_decode_failed at its entry address while sibling properties are retained. is_meta_class, is_root_class, and ivar_count are also nullable when the selected provider exposes only symbol names. Class implementation methods have null is_required and is_optional fields because those facts apply to protocol declarations; decoded protocol method lists retain their observed required/optional values. Class properties and __objc_catlist categories are also decoded. Categories record the extended class, local or external, plus their methods, protocols and properties; category methods appear as implementations with a category. A category whose class reference is null, or is bound to a symbol other than _OBJC_CLASS_$_, such as the _$s…CN metadata symbol of another module's Swift class, keeps a null class, and objc_properties_categories coverage names that reference. Swift field-offset globals that are only initialized at runtime stay unresolved. Generic, resilient, async and coroutine tables, and inherited overrides, have explicit unsupported or partial coverage. Other providers retain the existing symbol-based inventory with its narrower coverage. Symbols without a reported location remain in that inventory: Swift symbol address and Objective-C implementation_address are null. An empty provider address is retained as reported_address in the symbol's evidence, whose location also remains unknown. Nonempty provider address syntax is preserved.

    Session discovery reports this workflow available when the bound provider offers direct metadata inspection or a list_names symbol inventory. The workflow tries direct metadata first and uses the symbol fallback only when that operation is unavailable; runtime failures remain failures rather than being replaced by symbol-only results.

get_objc_classes keeps names from the provider inventory. It coalesces rows only when their exact selected-image pointer slots decode to the same class import, including its binding stream, raw library ordinal, resolved library, weak status, and addend. A literal filter is applied to the original names before that join; if the filter selects only an alias, the output keeps that exact row. identity_coverage distinguishes a complete selected-inventory scan from partial, unsupported, and unknown cases. Recognized Mach-O formats outside the native metadata reader's support retain the provider's class labels with unknown import identity; malformed headers and read failures remain errors. The join also requires matching whole-artifact digests and matching provider- owned selected-image facts: container, byte range, full raw CPU type/subtype, and FAT table digest when present. A missing or overridden loader selection remains unknown; the result describes agreement on the selected artifact image, not an atomic observation of a running process or whole-program class coverage.

Native desktop observation

observe_native_ui captures one explicitly selected existing PID/window ID. Screenshots use a selected-window ScreenCaptureKit filter on macOS 14+; accessibility reads stay within that window. Missing Screen Recording/Accessibility permissions produce actionable errors without broad capture or automatic permission prompts. Executable bytes and process launch time guard against a different target or PID reuse. AX selection requires one unique geometry match; ambiguity fails closed.

Accessibility node values preserve strings, finite numbers and booleans as their original JSON scalar types. Values that JSON cannot represent faithfully, including unsafe integers, negative zero and non-finite numbers, remain null with a path-specific gap and incomplete capture coverage. Null alone does not establish that an accessibility value was successfully read or absent.

An initial PID or window mismatch is invalid_request on pid or window_id and leaves provider availability intact. A selected window that exists off screen is not a mismatch: selection succeeds and the permission and capture checks report their own outcome. An unavailable executable URL or unresolved executable path leaves identity unknown and reports capability_unavailable. Identity or window loss after the initial capture remains an observation failure with collected facts. Permission and other helper failures retain their specific remediation text.

capture_native_ui_scenario takes AX child-index paths for press, increment/ decrement scrolling and text-value entry, or bounded waits. No global event injection is used. Unsupported AX actions fail explicitly. The result preserves ordered before/after captures and gaps; an action may have occurred before a post-action capture fails. Application state is left as-is; REA does not attempt to restore it. Failed or cancelled scenarios return a typed error with the collected report in partial_observation, including ordered step outcomes. Cancellation preserves the caller's reason and remains observable through helper cleanup. A later abort does not replace an earlier helper or output failure. Cleanup failures retain their runtime owner until a confirmed cleanup retry.

Scenarios accept caller-selected action lists and accessibility node counts. One wait step stays capped at 180000 ms. That cap has no runtime override. The operation deadline is native_ui_deadline_ms (omitted means 180000 ms) and does not raise the wait-step cap. The complete scenario result has a 64 MiB output budget. Screenshots are scaled to at most 2,048 pixels and captured only for the selected window. REA compiles one owned helper per scenario, removes its temporary compiler cache and stops its helper on cancellation. It does not launch or own the selected application. UI actions may change application data or trigger network activity.

Native call observation

observe_native_calls / rea observe-native-calls <app-or-mach-o> <input-json> launches the active Mach-O as a new, owned process under LLDB. It stops at caller-selected entries, records them and continues:

  • functions by exact symbol name, optionally limited to one image;
  • Objective-C methods by selector, optionally limited to one class and to instance or class methods.

LLDB discovery uses a separate 60000 ms xcrun deadline with no runtime override. Discovery timeouts report provider_timeout and retain timeout recovery, captured diagnostics and cleanup state. Output-budget and I/O failures retain their own error categories; only actual discovery unavailability reports missing LLDB. duration_ms controls the later target observation window.

rea observe-native-calls /Applications/Example.app '{"breakpoints":[{"kind":"objc-method","class_name":"NSURLSession","selector":"dataTaskWithRequest:completionHandler:"},{"kind":"function","name":"open","module":"libsystem_kernel.dylib"}],"duration_ms":5000,"backtrace_frames":4}' --json

Function names select LLDB runtime symbols. On Darwin, the Mach-O symbol table spells language-level symbols with one leading underscore, which LLDB and dlsym omit: _main is main, C++ __ZN3rea3addEii is _ZN3rea3addEii, and Swift _$s… is $s…. Names without that underscore, such as -[Class selector], are unchanged. inspect_macho keeps each export and import name exactly as the symbol table spells it and derives its runtime_name; pass runtime_name as the breakpoint name. observe_native_calls preserves the exact selected name; it does not remove underscores or translate static names, so _main selects a different runtime symbol. Use {"kind":"function","name":"main","module":"Example"} to limit that runtime symbol to the executable image named Example, then inspect the reported locations and image paths. Omitting module deliberately matches every loaded image, including system libraries. A match outside the executable is valid for that request and does not by itself make coverage partial. Event and location symbol values are LLDB display names, which are demangled for C++ and Swift; join them to inspect_macho through breakpoint_index and the request name, or through file_address and the export address.

Each event is an observation: thread, image, symbol, load and file address, the raw integer argument registers, optional caller frames and, for an Objective-C method, the selector read from _cmd and the receiver's dynamic class. Breakpoints stop at the symbol itself, so the registers hold the ABI arguments. The receiver class comes from LLDB's Objective-C runtime reader without running target code; no expression is evaluated, and REA never attaches to a process it did not launch.

The run ends when the process exits, max_events entries are recorded, duration_ms elapses, or the aggregate trace resource budget is exhausted. Bounded termination reports partial coverage. REA checks process termination using a launch-time OS start identity; if ownership or cleanup cannot be verified, the result or error preserves that uncertainty. The result reports: Launch errors keep the fact that LLDB created a process separate from whether it remains alive. An exited SBProcess is reported as exited only after LLDB confirms that state; unresolved ownership remains retained for cleanup retry. An invalid process returned by Launch, including a rejected working directory, reports explicit no-process creation. With no target PID or other retained resource, REA releases that runtime and admits the next observation. Cancellation observed while output and Evidence are finalized returns partial cancellation Evidence, even if the target has already exited.

  • the outcome, exit status and captured stdout/stderr (1 MiB kept per stream while excess bytes are drained and counted without growing capture files). Each stream reports complete; when draining could not finish, its byte count is an observed lower bound and truncation is explicit;
  • caller-selected arguments, working directory, and environment overrides, including literal JSON environment names such as __proto__;
  • selected_file_sha256 and LLDB module identity observations. These checks do not pin the executable against concurrent mutation; loaded_image_sha256 remains unknown;
  • signal or exception stops;
  • every breakpoint's resolved locations; a breakpoint that matched no loaded code makes coverage partial;
  • limitations.

The bridge limits retained event JSON to 8 MiB and caller frames to 65,536 across the run. It checks admission before retaining another complete event; resource-limit reports which observations could not be completed without silently changing the requested event or frame settings. Resolved breakpoint locations have a separate aggregate 8 MiB metadata budget. If their details exceed it, location_count retains the full observed match count, coverage is partial, and breakpoint_locations_truncated is true. This post-run metadata limit does not imply that the target was killed.

Accepted entries and signal stops are also flushed to a bounded 8 MiB journal. If cancellation, timeout, capture failure, or a later bridge error prevents a full result, the error retains this evidence in details.partial_observation with partial coverage. Available output prefixes remain inline; their byte counts are observed lower bounds when final drain counters are unavailable. The original failure classification and cleanup uncertainty remain separate. An interrupted journal row is ignored with an explicit limitation. If the trace completed before cancellation or runtime-directory cleanup failed, the retained observation also keeps its exit status, termination proof, launch identity, breakpoint results and final stream counters. Those fields remain absent when the interrupted producer did not report them; partial coverage alone does not mean that every retained fact is incomplete.

Only entries are observed: return values, floating-point and stack arguments, and inlined or objc_direct calls are not. The target runs with the current user's permissions and may change files, show UI or use the network.

Debugging must be allowed for the user (Developer Tools access). A hardened-runtime target without com.apple.security.get-task-allow cannot be debugged; inspect_signature reports the signature's hardened_runtime value and its entitlements, including com.apple.security.get-task-allow when it is present. A denied trace reports the debugger-attach-denied reason.

Provider and verification boundaries

Install a Ghidra 12.x (>=12.1) release and the 64-bit full JDK it declares, then configure REA to use them. Ghidra analysis supports Linux x64/arm64 and macOS x64/arm64; each installation requires the matching native decompiler. Experimental Windows x64 P0 admits native x86, x86-64, ARMNT (Thumb-2) and ARM64 PE applications and DLLs, plus explicitly selected raw NMOS 6502 images with a caller-supplied load address, on fixed local NTFS volumes. Other raw CPU families remain unsupported on Windows. The boundary uses bundled Job Object ownership, protected runtime DACLs, and handle-based path admission. See Windows Ghidra P0 and issue #527. On Linux and macOS, annotate_native_function atomically edits a function name and entry comments in the ephemeral database, returning refreshed analysis without changing executable bytes. Annotation text must contain no NUL or unpaired Unicode surrogate; a rejection identifies the field and UTF-16 index and leaves every annotation unchanged. CRLF, supplementary Unicode characters, and combining characters are preserved. Windows P0 remains read-only. Ghidra has no GUI authority, and REA never falls back automatically to Hopper. For a before-and-after compare_functions in MCP, call analyze_function before and after the edit while the session remains open; the annotation Evidence itself is not an analyze_function input. If comparing after close, export the needed Evidence before closing and import it into the later session. A one-shot CLI annotation returns its edited dossier before its temporary session is discarded; a later CLI invocation with the same fresh-import settings starts from the original executable. Comparison preserves correspondence across renames when authenticated artifact identity, architecture and provider-owned mapping and slice commitments establish the same canonical entry. The result reports matched, method: "same-entry" and entry_address; name and exact-text changes remain separate dimensions. Equal numeric addresses without applicable coordinate commitments do not establish same-entry correspondence. Inspect the retained source Evidence and coverage when correspondence remains ambiguous. To aggregate already-retained comparison results, pass their exact IDs to find_changed_behavior, for example:

await call("find_changed_behavior", {
  comparisons: comparisons.map(({ evidence_id }) => ({
    kind: "retained-evidence",
    evidence_id,
  })),
});

These IDs select comparison Evidence, not function dossiers or summary views. Complete inline comparisons remain accepted and can be mixed with references. The current server must retain the comparisons and their original source closure; import the complete source bundle after a session handoff. Missing or damaged records are explicit failures. A missing required retained record reports its exact evidence_id with details.reference_scope: "retained-closure". Import the originating bundle with its linked sources, or re-create those observations in the current investigation, before retrying; resending the inline comparison alone does not restore its closure. Aggregating static differences does not establish observed runtime change.

set_address_name and set_addresses_names give Ghidra sessions the same compact naming results as Hopper: a local function entry renames that function, and any other mapped address, such as a global, receives a new or renamed primary label. A batch decides every address from the names held before it: addresses that request the same name in one namespace, or a name another selected address holds, are rejected without applying them, so JSON member order never selects a winner. Every other address applies separately, and each address reports one success boolean. raw_result.failures gives each failed address's canonical address and reason. A contested name appears once in raw_result.conflicts, with its namespace, requesting addresses and holding addresses, and conflict failures refer to it by index. To move a label between addresses, rename its holder first and assign the name in a later call. Use them to name many globals and helpers cheaply; use annotate_native_function when you also want comments and a refreshed dossier. Ghidra name edits preserve the existing namespace. Supply either a leaf name such as renamed or a fully qualified name in that namespace, such as alpha::renamed. The returned qualified name can be reused as an idempotent rename input. Edits retain the existing namespace; other namespace-like text remains literal leaf-name text. A qualified name with an empty leaf is rejected before any comment or name is changed.

  • npm run verify:ghidra: host-native debug/stripped targets, native type layout, instruction/call facts, value dependencies and process/project cleanup.
  • npm run verify:ghidra:aarch64-jump-table: optimized ELF and byte/halfword relative tables, plus ARM64 Mach-O on an ARM64 macOS host.
  • npm run verify:apple-dispatch: source-built Objective-C protocols, classes, properties and categories, and Swift conformances and vtables. Each is linked with legacy LC_DYLD_INFO and with chained fixups (and as arm64e on Apple silicon), then repeated after stripping local symbols.
  • npm run verify:native-ui: one source-owned fixture window, successful selected-window capture and actions, changed-target rejection, and cleanup. Missing OS permissions fail this lane.
  • npm run verify:native-ui:permissions: permits a permission-denial result and reports positive_e2e: false when capture is denied. That result verifies the OS permission boundary, not successful UI capture or actions.

macOS ARM64 is the real host verified during this implementation. Admission of macOS Intel does not claim an Intel verification run. Unsupported metadata and unresolved runtime/value semantics remain visible in results.

Signature inspection requests the selected architecture explicitly for identity, hashes, designated requirements, entitlements and runtime flags. For universal inputs, other slices receive signing-state probes; their detailed metadata is not included in the selected result, and coverage states that boundary. The digest-verified temporary snapshot writes to the filesystem; discovery declares that effect even though the selected artifact is unchanged.

Interface Builder hierarchy coverage

Bundle archive selection preserves directory traversal uncertainty, including filenames that cannot be decoded as UTF-8. These names are not guessed or counted as known archive omissions. Recognized symlinked .nib entries are not followed; they retain their paths and reader limitations as counted archive omissions. Either gap makes archive_decode partial and the graph truncated while preserving decoded documents. Its examined count remains actual decode attempts. archive_object_decode separately reports whether archive selection and decoding examined the object sources; hierarchy-only and connection-only unknowns do not make that facet partial. Asset-catalog resource-key joins use this source coverage together with document and object projection coverage. Incomplete hierarchy or synthetic hierarchy-node limits alone do not qualify otherwise complete resource-key joins; omitted archives or resource objects do. Archive omission reasons are counted independently of the bounded path samples. A UID outside the exact supported range reports unsupported_uid_exact_range, not budget exhaustion. Mixed source failures report multiple_archive_decode_causes; limitations retain omission counts by cause even when individual paths exceed the reporting allowance.

UI dispatch joins use the authored receiver's class independently of its presentation kind (controller, view, control or another object). An unresolved action receiver remains an examined, unresolved dispatch relationship and makes ui_to_objc_dispatch partial. Graph object limits retain their own cause in connection coverage, rather than being attributed to a connection budget.

A document's hierarchy_complete flag follows its own hierarchy coverage. If graph limits omit a hierarchy source or destination, or prevent a hierarchy edge or traversal from being retained, that document reports partial hierarchy coverage. Retained unresolved edges remain in the graph and do not add to the omitted-edge count. Coverage is evaluated separately for each document.

A keyed-archive hierarchy UID without an object-table entry marks the hierarchy as partial while preserving decoded objects and known links. UID 0 remains archived nil and does not count as a missing reference. Archive and evidence digests identify the original serialized bytes.

Keyed archive integer precision

The archive reader observes XML number element types and binary number markers. XML values and their number facts are interpreted together from the validated DOM and its original scalar source spans. Hexadecimal <integer> text, including an optional sign, retains its value; <real> text and CDATA segments are combined without inferring text from nested elements. Real character references expand outside CDATA; integer and date literals use raw source text. Integers beyond the exact range of a JSON number are reported with the original decimal text as { "$plist_type": "integer", "decimal": "<exact digits>" } when that source value can be associated unambiguously. Integral real values remain numbers. Colliding integer/real values, unclassified numbers, and malformed UID markers remain decoded with an explicit precision limitation. The limitation also counts observed unsafe integer literals, including observations outside the selected object page. Incomplete supplemental metadata produces an explicit precision note without rejecting an archive accepted by the byte decoder. Malformed XML scalar content becomes an explicit unknown rather than a prefix number, guessed timestamp, or tag-only boolean. These unknowns do not disable exact association for unrelated observed numbers. Nonnumeric UID and CF$UID dictionary values remain ordinary data and are projected recursively; numeric reference markers retain their original representation.

Value projection preserves serialized node kinds, IDs, references and pagination. Exact and ambiguous value counts describe emitted root/object value instances; a root and an object may contain the same value. Archive digests identify the original bytes.

Interface Builder's XML and binary plist archives use the same number metadata and exact-decimal representation for emitted node attributes. Projection follows object and connection classification, so archive IDs, UID links and graph counts keep their meaning. Precision limitations name the source document. Unsafe integer-literal counts cover the archive, including fields not emitted as node attributes; exact and ambiguous projection counts cover emitted attribute values. Integral reals stay numbers, and ambiguous or incompletely observed values retain explicit precision limitations. Before plist decoding, the existing aggregate decode budget reserves estimated room for number metadata and attribute projection; these estimates are not a hard process-memory bound. Keyed-archive object identities always come from their original $objects table indices. Authored objectID, object-id, archiveUID and id fields remain ordinary object data and do not change inventory, reference, connector or hierarchy identity. This changes keyed-archive graph IDs that previously used authored objectID or object-id values: interface_builder_object_id and linked node IDs now use the decimal table UID, while the authored values remain in attributes. For example, an authored objectID: "2" on table entry 1 now identifies object "1"; its graph node ends in object:["1"]. Nonkeyed ibtool dictionary IDs and native NIBArchive IDs keep their existing source-specific meaning. Connector endpoints require encoded UID references to archived objects; strings and dictionaries that merely resemble resolved reference stubs do not establish identity. Inline hierarchy dictionaries have no table identity and count as omitted references, while independently referenced children remain available. The UID identity rule follows the Foundation unarchiver's table lookup. UIKit keyed nibs select their explicitly named UINibTopLevelObjectsKey collection; generic root is used when that named key is absent. Unsupported or dangling named roots remain incomplete rather than falling back to another collection. The key spelling follows the independent WinObjC UINib reader.

NIBArchive float32 and float64 values retain non-finite values and negative zero through projection as the same typed real wrappers used for plist values; per-document limitations count those values. NIBArchive nil remains JSON null.

Dates are reported as { "$plist_type": "date", "iso8601": "<timestamp>" }. XML dates require a complete UTC spelling with fixed two-digit month, day and time fields; short, negative and extended years are interpreted as UTC year fields within JavaScript's date range. Unsupported calendar fields (including leap seconds) and out-of-range dates remain explicit unknowns. REA does not emulate CoreFoundation's normalization of overflowing calendar fields. Invalid dates returned by other decoders retain { "$plist_type": "date", "iso8601": null } with a counted limitation. inspect_plist and Interface Builder decoding use the same projection. Binary plist decoding refuses a reachable date whose marker is not 0x33; date and numeric payloads must end before the offset table. Valid overlapping object records retain their independent source values. A valid 0x33 date is reported with an ISO-8601 timestamp only when its float64 seconds are exactly the canonical encoding of that millisecond instant. Any other finite binary date uses { "$plist_type": "date", "iso8601": null } and the counted limitation; the archive bytes remain the source of the instant.

A negative-zero real is reported as { "$plist_type": "real", "value": "-0" } because a JSON number cannot carry the sign of zero. inspect_plist and inspect_keyed_archive count these values in a limitation, and Interface Builder node attributes use the same value. Positive zero and integer zero, including an <integer>-0</integer> literal, remain the number 0.

Known non-finite reals are reported as { "$plist_type": "real", "value": "nan" | "+infinity" | "-infinity" }. These are canonical numeric labels, not a claim about original source spelling. Binary IEEE reals retain NaN versus signed infinity; NaN payload bits and sign are not represented in the JSON value, and the original bytes remain the source for those details. XML CFPropertyList literals (nan, +infinity, -infinity, infinity, inf, +inf, -inf, case-insensitively) decode to the same known values. Case and aliases normalize; original archive bytes retain source text.

XML scalars whose identity cannot be established use { "$plist_type": "unknown", "element": "integer" | "real" | "date" | "true" | "false", "literal": "<original content>", "reason": "invalid-literal" | "unsupported-markup" | "unrepresentable" }. A counted limitation accompanies these wrappers. Literal content retains its original entity spelling, markup and line endings. Whole XML documents must still pass strict well-formedness checks. Empty integer, real and date elements are unknown scalars; boolean elements must be empty. Complete decimal/exponent reals and signed decimal/hexadecimal integers accept their respective native leading whitespace but reject trailing text. Arbitrary-precision integers remain an intentional REA extension beyond CoreFoundation's integer range. Finite real spellings that overflow the numeric representation remain unknown, rather than becoming observed infinities. Known non-finite and unresolved scalar values have separate counts. This replaces the former prefix-number and incomplete-metadata fallback for malformed XML numeric content. Native inspect_plist uses the same projection for plutil's XML conversion.

Locate a byte signature

Use search_bytes after opening a target with Ghidra to locate a known constant or instruction sequence. For example, {"pattern":"48 8B ?? ?? 89","limit":100} returns ordered addresses with segments, source file offsets and containing procedures. The CLI equivalent is rea search-bytes ./program '48 8B ?? ?? 89' --provider ghidra. Use start/end to constrain the inclusive address window, and continue with next_cursor until complete is true. Inspect searched for page coverage and skipped uninitialized blocks. A missing match does not establish absence from uninitialized or excluded memory. See Ghidra byte search for mask and coverage semantics. This query never executes or modifies target bytes.

Exact-name xref lookup reports distinct candidate addresses as an input ambiguity; inventory order cannot select one silently. Duplicate rows at one address remain a singular match, and a missing name remains an unresolved observation.

Hopper procedure names must identify a procedure entry. A non-entry symbol returns an input diagnostic with its coordinate and containing procedure; an explicit numeric address still selects its containing procedure. Use resolve_containing_procedure to request containment directly. IDA and Hopper reject reserved file-offset: selectors before name lookup; source-file offset selection belongs to the Ghidra import mapping.

Native function names carry observed symbol metadata where available. Ghidra uses its function symbol's source and dynamic flags; Hopper and IDA leave origin unknown because this adapter has no verified origin API. Comparison and matching cannot use unknown labels as cross-artifact identity, even when their spelling looks meaningful. Original labels remain in Evidence. This qualification does not change address equality in a known common native coordinate context.